VISDB Viral Integration Site DataBase

VIS ID

TVIS10016191

Fusion event

HBV-SND1 integration

Validated

No

Detection method

WGS

Data source

Curated

Sample type

Disease

Hepatocellular carcinoma (HCC)

Quality evaluation

Normal

Reported year

2012

PubMed ID

Virus name

HBV

Reference genome

Start

2908

Orient

-

Integrated sequence

ACGTCCTTTGTTTACGTCCCGTCGGCGCTGAATCCCGCGGACGACCCCTCCCGGGGCCGCTTGGGGCTCTACCGGCCGCTTCTCCGTCTCCCGTACCGAC| |CGACCACGGGGCGCACCTCTCTTTACGCGGACTCCCCGTCTGTGCCTTCTCATCTGCCGGACCGTGTGCACTTCGCTTCACCTCTGCACGTCGCATGGAG

Chromosome

chr7

Cytoband

q32.1

Reference genome

Start

End

127554049/127913996 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-26b-5p ; hsa-mir-877-3p ; hsa-mir-93-5p ; hsa-mir-16-5p ; hsa-mir-361-5p ; hsa-mir-6878-5p ; hsa-mir-198 ; hsa-mir-5703 ; hsa-mir-4516 ; hsa-mir-4434 ; hsa-mir-6770-5p ; hsa-mir-6837-5p ; hsa-mir-4685-5p ; hsa-mir-7113-5p ; hsa-mir-6754-5p ; hsa-mir-4441 ; hsa-mir-6760-5p ; hsa-mir-4270 ; hsa-mir-6756-3p ; hsa-mir-6749-3p ; hsa-mir-6792-3p ; hsa-mir-4691-5p ; hsa-mir-6845-3p ; hsa-mir-4469 ; hsa-mir-3667-3p ; hsa-mir-6734-3p ; hsa-mir-5009-3p ; hsa-mir-4667-3p ; hsa-mir-1470 ; hsa-mir-184

Nearest miRNA

hsa-mir-10525/Upstream/855812; hsa-mir-10399/Downstream/167865;

Nearest TSS

Nearest CpG islands

None/Target, chr7-CpG: 39/Upstream/261499, chr7-CpG: 213/Downstream/117109

Nearby gene

PAX4(-298269) ; SND1-IT1(+83512) ;

Upstream sequence

TGTCACAAGCAGTAAGGAGTTTAATTTAAGCATCTGCCAGGGACAAAAATTCAGTCAAGGCTTTTTTGTTGTTGTTGCTATTAGGAATCAATCTACAAGA

Downstream sequence

ATTAGAGCTCAGGGTTGCTTTGAAATGCCCTGGTCGTTTTCTGCCTCAGTTGTTCAGCAAATGGTGTTCTCAGGAAGAAATTATAGAATTCCTAATACAG