ATP6V0A4 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10016192
Fusion event
HBV-ATP6V0A4 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2012
PubMed ID
22267523
Virus Sequence
Virus name
HBV
Reference genome
AY033073.1
Start
518
Orient
-
Integrated sequence
AACTGTTCTCGAATATTTGGTGTCTTTTGGAGTGTGGATTCGCACTCCTCCTGCATATAGACCACCAAATGCCCCTATCTTATCAACACTTCCGGAAACT| |ACTGTTGTTAGACGACGAGGCAGGTCCCCTAGAAGAAGAACTCCCTCGCCTCGCAGACGAAGGTCTCAATCACCGCGTCGCAGAAGATCTCAATCTCGGG
Host Sequence
Chromosome
chr7
Cytoband
q34
Reference genome
GRCh37/hg19
Start
138471957/138787212 (Hg38)
End
138471957/138787212 (Hg38)
Orient
-
Location type
Intronic
Target gene
ATP6V0A4
Nearest miRNA
hsa-mir-10525/Upstream/663391; hsa-mir-10399/Downstream/256888;
Nearest TSS
ENST00000635602/Upstream/962; ENST00000472775/Downstream/10740;
Nearest CpG islands
None/Target, chr7-CpG: 39/Upstream/122092, chr7-CpG: 17/Downstream/80703
Nearby gene
ATP6V0A4(-13175) ; TMEM213(+10781) ;
Upstream sequence
tgcagtgtgccgagatcgtgtaattgcactccagcctgggccacagaTTCAAAATCAAAGCTTTTTAGATTCCCTGTACTATGAGTCTAGTGGTTCTTTC
Downstream sequence
GTGTTAGGAAGTATACATAGCAAAACCCTTTCTGGGCATCACGTATCCCCTCTGCAGAGTCCTGCGGACCCCAGAGAAAATTCTCCCCACAAAGGATGGA
Reference
Jiang, S., et al. Re-evaluation of the carcinogenic significance of hepatitis B virus integration in hepatocarcinogenesis. PLoS One ,2012, 7(9): e40363.
Curate