Basic Information
VIS ID
TVIS10016194
Fusion event
HBV-LINC01414 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2012
PubMed ID
22267523
Virus Sequence
Virus name
HBV
Reference genome
AY033073.1
Start
2094
Orient
+
Integrated sequence
GTATTCCCATCCCATCATCTTGGGCTTTCGCAAAATACCTATGGGAGTGGGCCTCAGTCCGTTTCTCATGGCTCAGTTTACTAGTGCCATTTGTTCAGTG| |GTTCGTAGGGCTTTCCCCCACTGTCTGGCTTTCAGTTATAGTGATGATATGGTATTGGGGGCCAAGTCTGTACAACATCTTGAGTCCCTTTATACCGCTG
Host Sequence
Chromosome
chr8
Cytoband
q12.3
Reference genome
GRCh37/hg19
Start
65028375/64115818 (Hg38)
End
65028375/64115818 (Hg38)
Orient
+
Location type
Intronic
Target gene
LINC01414
Nearest miRNA
hsa-mir-124-1/Upstream/2400959; hsa-mir-10400/Downstream/263331;
Nearest TSS
ENST00000518652/Upstream/346388; ENST00000524060/Downstream/124464;
Nearest CpG islands
None/Target, chr8-CpG: 109/Upstream/946611, chr8-CpG: 109/Downstream/253528
Nearby gene
YTHDF3(-903029) ; MIR124-2HG(+257399) ;
Upstream sequence
ctcttaaaaaagagaaaaaaagaaGATGGTAAGTTGGGCTTTTTTATCAAACAAAACTTGTGttcattgggctaacaaatacatagagtgtctactacta
Downstream sequence
attacacatgaacaaactaaaaaacctaaaggaaatggataaatttctggtcacatacaacctactataattaagtcagggagaaatagaaaatgtgaac
Reference
Jiang, S., et al. Re-evaluation of the carcinogenic significance of hepatitis B virus integration in hepatocarcinogenesis. PLoS One ,2012, 7(9): e40363.
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