CR1L _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10016208
Fusion event
HBV-CR1L integration
Validated
No
Detection method
RNA-Seq
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Good
Reported year
2012
PubMed ID
22267523
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Start
1801
End
1823
Orient
-
Integrated sequence
TGCGCACCAGCACCATGCAACTT
Host Sequence
Chromosome
chr1
Cytoband
q32.2
Reference genome
GRCh37/hg19
Start
207868453/207695108 (Hg38)
End
207868524/207695179 (Hg38)
Orient
+
Location type
Intronic
Target gene
CR1L
Nearest miRNA
hsa-mir-101-1/Upstream/1220244; hsa-mir-1182/Downstream/106673;
Nearest TSS
ENST00000473358/Upstream/17648; ENST00000493796/Downstream/16329;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/25194, chr1-CpG: 72/Downstream/56647
Upstream sequence
GAGAGTCATGGGATCCCAGTTCGTGTTGGACAGGACATTAGAGAAGATCCAGTCTTATCATTCTACTTGTGTATGAAAACTATTCTCTTCTCAGTAACAT
Downstream sequence
cagaggtgagatcatggcttactgcaaccgccacctccctggctcaagcaattctcctgcctgagcctcccaagcagctgggactacaggtgcatgctac
Target sequence
ccagtttttctaggtttgtctgttttgttttgcttgagacagggtcttgatctgtcactcaagttggactg
Reference
Jiang, S., et al. Re-evaluation of the carcinogenic significance of hepatitis B virus integration in hepatocarcinogenesis. PLoS One ,2012, 7(9): e40363.
Curate