GDPD4 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10016234
Fusion event
HBV-GDPD4 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Good
Reported year
2012
PubMed ID
22267523
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Start
1761
End
1796
Orient
-
Integrated sequence
AAAGGTCTTTGTACTAGGAGGCTGTAGGCATAAATT
Host Sequence
Chromosome
chr11
Cytoband
q13.5
Reference genome
GRCh37/hg19
Start
76946286/77235241 (Hg38)
End
76946321/77235276 (Hg38)
Orient
-
Location type
Intronic
Target gene
GDPD4
Nearest miRNA
hsa-mir-10392/Upstream/1900055; hsa-let-7a-2/Downstream/2166746;
Nearest TSS
ENST00000527297/Upstream/10939; ENST00000598970/Downstream/52142;
Nearest CpG islands
None/Target, chr11-CpG: 30/Upstream/55301, chr11-CpG: 33/Downstream/176415
Nearby gene
MYO7A(-20000) ; PAK1(+86773) ;
Upstream sequence
ACCCCAAGACAAAAAGTAGCAAttttctcccagagtccacacagagctggctcatgtaagctgctttcggtaagactaaacggggcctcttcagtgaggc
Downstream sequence
atagatctgtaagtttgatgcagcaaggtttttttgtacaattagcaagtggattataagattcatatggaaaagcacagccctacaataattaaaacaa
Target sequence
aattcaatgtagtaaagatgtcagttctccctcaa
Reference
Jiang, S., et al. Re-evaluation of the carcinogenic significance of hepatitis B virus integration in hepatocarcinogenesis. PLoS One ,2012, 7(9): e40363.
Curate