VISDB Viral Integration Site DataBase

VIS ID

TVIS10016239

Fusion event

HBV-ATF7IP integration

Validated

No

Detection method

RNA-Seq

Data source

Curated

Sample type

Disease

Hepatocellular carcinoma (HCC)

Quality evaluation

Good

Reported year

2012

PubMed ID

Virus name

HBV

Reference genome

Start

1725

End

1747

Orient

+

Integrated sequence

TAAAGACTGGGAGGAGTTGGGGG

Chromosome

chr12

Cytoband

p13.1

Reference genome

Start

End

14632637/14479703 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-320b ; hsa-mir-744-5p ; hsa-mir-320a ; hsa-mir-23b-3p ; hsa-mir-599 ; hsa-mir-1303 ; hsa-mir-527 ; hsa-mir-518a-5p ; hsa-mir-548aw ; hsa-mir-3145-3p ; hsa-mir-92b-3p ; hsa-mir-92a-3p ; hsa-mir-367-3p ; hsa-mir-363-3p ; hsa-mir-32-5p ; hsa-mir-25-3p ; hsa-mir-607 ; hsa-mir-484 ; hsa-mir-3155b ; hsa-mir-3155a ; hsa-mir-520h ; hsa-mir-520g-3p ; hsa-mir-3973 ; hsa-mir-205-3p ; hsa-mir-1244 ; hsa-mir-4482-5p ; hsa-mir-3130-5p ; hsa-mir-548l ; hsa-mir-548as-3p ; hsa-mir-548x-3p ; hsa-mir-548j-3p ; hsa-mir-548aq-3p ; hsa-mir-548am-3p ; hsa-mir-548aj-3p ; hsa-mir-548ah-3p ; hsa-mir-548ae-3p ; hsa-mir-548z ; hsa-mir-548h-3p ; hsa-mir-548d-3p ; hsa-mir-548bb-3p ; hsa-mir-548ac ; hsa-mir-199a-3p ; hsa-mir-199b-3p ; hsa-mir-3129-5p ; hsa-mir-525-5p ; hsa-mir-520a-5p ; hsa-mir-198 ; hsa-mir-4304 ; hsa-mir-16-1-3p ; hsa-mir-144-3p ; hsa-mir-548c-3p ; hsa-mir-548o-3p ; hsa-mir-1323 ; hsa-mir-8485 ; hsa-mir-652-5p ; hsa-mir-6722-5p ; hsa-mir-4772-3p ; hsa-mir-6787-3p ; hsa-mir-1304-3p ; hsa-mir-4485-5p ; hsa-mir-6736-3p ; hsa-mir-6890-3p ; hsa-mir-652-3p ; hsa-mir-454-3p ; hsa-mir-4295 ; hsa-mir-3666 ; hsa-mir-301b-3p ; hsa-mir-301a-3p ; hsa-mir-130b-3p ; hsa-mir-130a-3p ; hsa-mir-216a-5p ; hsa-mir-6788-5p ; hsa-mir-30c-2-3p ; hsa-mir-30c-1-3p ; hsa-mir-33b-5p ; hsa-mir-33a-5p ; hsa-mir-5579-3p ; hsa-mir-8085 ; hsa-mir-6731-5p ; hsa-mir-6878-5p ; hsa-mir-3192-5p ; hsa-mir-186-3p ; hsa-mir-590-5p ; hsa-mir-21-5p ; hsa-mir-548p ; hsa-mir-1227-3p ; hsa-mir-1827 ; hsa-mir-1910-3p ; hsa-mir-2467-3p ; hsa-mir-3612 ; hsa-mir-377-5p ; hsa-mir-4257 ; hsa-mir-4459 ; hsa-mir-455-3p ; hsa-mir-4695-5p ; hsa-mir-4715-3p ; hsa-mir-550b-2-5p ; hsa-mir-6086 ; hsa-mir-6499-3p ; hsa-mir-650 ; hsa-mir-6511a-5p ; hsa-mir-6516-5p ; hsa-mir-665 ; hsa-mir-6807-5p ; hsa-mir-6840-3p

Nearest miRNA

hsa-mir-1244-3/Upstream/1563674; hsa-let-7i/Downstream/3193596;

Nearest TSS

Nearest CpG islands

None/Target, chr12-CpG: 104/Upstream/497589, chr12-CpG: 77/Downstream/87611

Upstream sequence

attTATGGAATAATATTTCTTTGCTTACATAAAGATTAAGGTGTCATAATTAATCTCAGAAGCTTCTCTTCGTAAAGTGCCCTTATTACTGAACCCCCAC

Downstream sequence

ATGCAGACTTTCCTATCAGTTAAAATAAATTTTACCTTGTTGGCATTTCCAGGCAAAAGAATGTGCCTATGTGACTTTATTTCTGGTGTGTAGATTTTAT

Target sequence

ACTATTTGTTAATTAACCTTTGAGTTATGAAATTATTGTTGATGCAGCAAATGTGTGGTTGTTTTGGTAGGGACTGTTTAGATTTGTTGAATTTCAGAATCTTAGATGCTT