CAB39L _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10016248
Fusion event
HBV-CAB39L integration
Validated
No
Detection method
RNA-Seq
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Good
Reported year
2012
PubMed ID
22267523
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Start
1798
End
1820
Orient
-
Integrated sequence
GTCTGCGCACCAGCACCATGCAA
Host Sequence
Chromosome
chr13
Cytoband
q14.2
Reference genome
GRCh37/hg19
Start
50003843/49429707 (Hg38)
End
50003928/49429792 (Hg38)
Orient
+
Location type
Intronic
Target gene
CAB39L
miRNAs that regulate target gene
hsa-mir-155-5p ; hsa-mir-192-5p ; hsa-mir-26b-5p ; hsa-mir-10a-5p ; hsa-mir-27a-3p ; hsa-mir-27b-3p
Nearest miRNA
hsa-mir-2276/Upstream/5233507; hsa-mir-1267/Downstream/566623;
Nearest TSS
ENST00000623511/Upstream/9232; ENST00000481439/Downstream/14261;
Nearest CpG islands
None/Target, chr13-CpG: 551/Upstream/181140, chr13-CpG: 57/Downstream/14193
Upstream sequence
cttacttagtttattttattaggaaaaaataccacaaattggctgactgggtcaaaacatacatacattttttagaaccttgctatatgctgatttctaa
Downstream sequence
gggattgaacactcctttttgtgtttttcactttgttcttatgagaactataaattcatatctGTATTTCATTTACTATAGTCTTGAGATTTTTCTTATA
Target sequence
caagtacctcgttgaattcttgcttatttagaatgaaataaaatgttctcttatagttttaatttgcatttatttgattacttgt
Reference
Jiang, S., et al. Re-evaluation of the carcinogenic significance of hepatitis B virus integration in hepatocarcinogenesis. PLoS One ,2012, 7(9): e40363.
Curate