hsa-mir-4744 _LIHC.png
CTDSPL2 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10016257
Fusion event
HBV-CTDSPL2 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Good
Reported year
2012
PubMed ID
22267523
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Start
3096
End
3131
Orient
+
Integrated sequence
CTGCCTCCACCAATCGCCAGTCAGGAAGGCAGCCTA
Host Sequence
Chromosome
chr15
Cytoband
q15.3
Reference genome
GRCh37/hg19
Start
44772123/44479925 (Hg38)
End
44772158/44479960 (Hg38)
Orient
-
Location type
Intronic
Target gene
CTDSPL2
miRNAs that regulate target gene
hsa-mir-132-3p ; hsa-mir-877-3p ; hsa-mir-193b-3p ; hsa-mir-100-5p ; hsa-mir-374a-5p ; hsa-mir-18b-3p ; hsa-mir-3157-3p ; hsa-mir-4744 ; hsa-mir-4709-3p ; hsa-mir-3127-5p ; hsa-mir-4772-5p ; hsa-mir-383-5p ; hsa-mir-4699-5p ; hsa-mir-539-5p ; hsa-mir-3918 ; hsa-mir-4761-3p ; hsa-mir-140-3p ; hsa-mir-618 ; hsa-mir-548x-3p ; hsa-mir-548j-3p ; hsa-mir-548aq-3p ; hsa-mir-548am-3p ; hsa-mir-548aj-3p ; hsa-mir-548ah-3p ; hsa-mir-548ae-3p
Nearest miRNA
hsa-mir-1233-1/Upstream/686166; hsa-mir-10393/Downstream/237884;
Nearest TSS
ENST00000557528/Upstream/20922; ENST00000561189/Downstream/11032;
Nearest CpG islands
None/Target, chr15-CpG: 55/Upstream/51985, chr15-CpG: 131/Downstream/56479
Nearby gene
CASC4(-64164) ; EIF3J-DT(+54579) ;
Upstream sequence
GAAAACATTTGTATACAAATCTTTTCACTTTGGGAAGACTGGAATATTAAACAGCTGGGTAACTAAACAGTTGAAAGATACATTTCACTTTAAATAGAAA
Downstream sequence
TTTTAAATATTGGTGATGCTTTTTGAGTTTTGTCTTTTATTTCTACCATGTGTTTATTTGGAATTTCTCTGTCTTTTCTCTCTGTGCCTGCCCTACTCAC
Target sequence
TATCTCTTTGAACAAATTTTGTTTTTATGTAGTGT
Reference
Jiang, S., et al. Re-evaluation of the carcinogenic significance of hepatitis B virus integration in hepatocarcinogenesis. PLoS One ,2012, 7(9): e40363.
Curate