Basic Information
VIS ID
TVIS10016261
Fusion event
HBV-chr15 integration
Validated
No
Detection method
RNA-Seq
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Good
Reported year
2012
PubMed ID
22267523
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Start
1774
End
1795
Orient
-
Integrated sequence
CTAGGAGGCTGTAGGCATAAAT
Host Sequence
Chromosome
chr15
Cytoband
q26.3
Reference genome
GRCh37/hg19
Start
99934083/99393878 (Hg38)
End
99934159/99393954 (Hg38)
Orient
+
Nearest miRNA
hsa-mir-10393/Upstream/609376; hsa-mir-1302-10/Downstream/2566505;
Nearest TSS
ENST00000557528/Upstream/9584; ENST00000621331/Downstream/2639;
Nearest CpG islands
None/Target, chr15-CpG: 55/Upstream/142041, chr15-CpG: 154/Downstream/171209
Nearby gene
LRRC28(-3146) ; LOC105371017(+445) ;
Upstream sequence
ccaccacacccggctaatttttgtatttttaggagagacgaggtttcaccatgttggccaggatggtctcgatctcttgacctcgtgatccacccacctt
Downstream sequence
aaaataagagttcatatgacaacaaattagggaacttagatgacatggacaaatttctagaaagacatatcaaaactgaagaagaaataaaaactttaaa
Target sequence
cagcctagaaaaaaaaatagagaagatagattaccaaagtcaggaatgaaagactactaccaatcttatggaaata
Reference
Jiang, S., et al. Re-evaluation of the carcinogenic significance of hepatitis B virus integration in hepatocarcinogenesis. PLoS One ,2012, 7(9): e40363.
Curate