HS3ST4 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10016263
Fusion event
HBV-HS3ST4 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Good
Reported year
2012
PubMed ID
22267523
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Start
145
End
180
Orient
-
Integrated sequence
CTGCGCTGAACATGGAGAACATCACATCAGGATTCC
Host Sequence
Chromosome
chr16
Cytoband
p12.1
Reference genome
GRCh37/hg19
Start
25918088/25906767 (Hg38)
End
25918123/25906802 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
FRA16E
Target gene
HS3ST4
Nearest miRNA
hsa-mir-1225/Upstream/1703536; hsa-mir-11401/Downstream/118435;
Nearest TSS
ENST00000527434/Upstream/20021; ENST00000609586/Downstream/395262;
Nearest CpG islands
None/Target, chr16-CpG: 29/Upstream/213457, chr16-CpG: 34/Downstream/1202888
Upstream sequence
cgcggcagctcacgcctgtaatcccagcactttgggaggctgaggcgggtggatcacctgaggtcaggagttcaagatcagcctggccaacatggtgaaa
Downstream sequence
GCTTAAGGAAGGTAAAATTAAGTGGATTCCTAATAAACTGCCAACAATTTTAGATTTCAAGCAATAGAGAGACAGGATAAGATGCCTGTCTTGATTAAAG
Target sequence
GTGGCTGGTATCTAGGAAGCATGTTTGGAAATAGC
Reference
Jiang, S., et al. Re-evaluation of the carcinogenic significance of hepatitis B virus integration in hepatocarcinogenesis. PLoS One ,2012, 7(9): e40363.
Curate