DPP10 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10016279
Fusion event
HBV-DPP10 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Good
Reported year
2012
PubMed ID
22267523
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Start
1472
End
1507
Orient
-
Integrated sequence
CGCTTGGGACTCTCTCGTCCCCTTCTCCGTCTGCCG
Host Sequence
Chromosome
chr2
Cytoband
q14.1
Reference genome
GRCh37/hg19
Start
116249868/115492292 (Hg38)
End
116249903/115492327 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
FRA2S
Target gene
DPP10
Nearest miRNA
hsa-mir-1285-2/Upstream/1770924; hsa-mir-10b/Downstream/11931210;
Nearest TSS
ENST00000437798/Upstream/51420; ENST00000473362/Downstream/322336;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/329103, chr2-CpG: 48/Downstream/2322209
Upstream sequence
ccctggagccccagagggtgtatgttacaatcagtgctcctttagcattcgatgtccatggacagctaagtgttgaccagttcagtggaagatcagagtg
Downstream sequence
aagcaaagaagagttgcttataaagttttgggggtatgtagtttgacaggtatttcaataagtggtcttgattagagttgggcatactttgtgattaaga
Target sequence
ttgtcacagaaagtgagcagcatatggaaagagaa
Reference
Jiang, S., et al. Re-evaluation of the carcinogenic significance of hepatitis B virus integration in hepatocarcinogenesis. PLoS One ,2012, 7(9): e40363.
Curate