VISDB Viral Integration Site DataBase

VIS ID

TVIS10016292

Fusion event

HBV-CYP20A1 integration

Validated

No

Detection method

RNA-Seq

Data source

Curated

Sample type

Disease

Hepatocellular carcinoma (HCC)

Quality evaluation

Good

Reported year

2012

PubMed ID

Virus name

HBV

Reference genome

Start

1787

End

1798

Orient

-

Integrated sequence

GGCATAAATTGG

Chromosome

chr2

Cytoband

q33.2

Reference genome

Start

End

204104988/203240265 (Hg38)

Orient

-

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-375 ; hsa-mir-1-3p ; hsa-mir-24-3p ; hsa-mir-203a-3p ; hsa-mir-526b-5p ; hsa-mir-24-2-5p ; hsa-mir-24-1-5p ; hsa-mir-4635 ; hsa-mir-6516-5p ; hsa-mir-6779-5p ; hsa-mir-6780a-5p ; hsa-mir-3689c ; hsa-mir-3689b-3p ; hsa-mir-3689a-3p ; hsa-mir-30b-3p ; hsa-mir-1273h-5p ; hsa-mir-6807-5p ; hsa-mir-455-3p ; hsa-mir-6799-5p ; hsa-mir-6883-5p ; hsa-mir-4728-5p ; hsa-mir-6785-5p ; hsa-mir-149-3p ; hsa-mir-7106-5p ; hsa-mir-4763-3p ; hsa-mir-650 ; hsa-mir-1207-5p ; hsa-mir-3612 ; hsa-mir-6499-3p ; hsa-mir-6722-3p ; hsa-mir-1909-3p ; hsa-mir-940 ; hsa-mir-3192-5p ; hsa-mir-6893-5p ; hsa-mir-6808-5p ; hsa-mir-7851-3p ; hsa-mir-490-3p ; hsa-mir-4307 ; hsa-mir-33a-3p ; hsa-mir-7151-3p ; hsa-mir-5095 ; hsa-mir-661 ; hsa-mir-3116 ; hsa-mir-1254 ; hsa-mir-3922-3p ; hsa-mir-3176 ; hsa-mir-6872-3p ; hsa-mir-6504-3p ; hsa-mir-4438 ; hsa-mir-548l ; hsa-mir-8054 ; hsa-mir-548k ; hsa-mir-548av-5p ; hsa-mir-559 ; hsa-mir-548y ; hsa-mir-548w ; hsa-mir-548o-5p ; hsa-mir-548j-5p ; hsa-mir-548i ; hsa-mir-548h-5p ; hsa-mir-548d-5p ; hsa-mir-548c-5p ; hsa-mir-548bb-5p ; hsa-mir-548b-5p ; hsa-mir-548ay-5p ; hsa-mir-548au-5p ; hsa-mir-548as-5p ; hsa-mir-548ar-5p ; hsa-mir-548aq-5p ; hsa-mir-548ap-5p ; hsa-mir-548am-5p ; hsa-mir-548ak ; hsa-mir-548ae-5p ; hsa-mir-548ad-5p ; hsa-mir-548ab ; hsa-mir-548a-5p ; hsa-mir-6848-3p ; hsa-mir-6843-3p ; hsa-mir-4535 ; hsa-mir-659-5p ; hsa-mir-6861-3p ; hsa-mir-492 ; hsa-mir-3663-5p ; hsa-mir-422a ; hsa-mir-378i ; hsa-mir-378h ; hsa-mir-378f ; hsa-mir-378e ; hsa-mir-378d ; hsa-mir-378c ; hsa-mir-378b ; hsa-mir-378a-3p ; hsa-mir-4638-3p ; hsa-mir-518c-5p ; hsa-mir-372-5p ; hsa-mir-371a-5p ; hsa-mir-616-5p ; hsa-mir-373-5p ; hsa-mir-371b-5p ; hsa-mir-3934-5p ; hsa-mir-764 ; hsa-mir-125a-3p ; hsa-mir-514a-5p ; hsa-mir-8057 ; hsa-mir-106a-3p ; hsa-mir-4430 ; hsa-mir-3652 ; hsa-mir-4284 ; hsa-mir-122-5p ; hsa-mir-504-3p ; hsa-mir-3135b ; hsa-mir-454-3p ; hsa-mir-4295 ; hsa-mir-3666 ; hsa-mir-301b-3p ; hsa-mir-301a-3p ; hsa-mir-130b-3p ; hsa-mir-130a-3p ; hsa-mir-3686 ; hsa-mir-6781-5p ; hsa-mir-3607-3p ; hsa-mir-615-3p ; hsa-mir-6514-3p ; hsa-mir-7977 ; hsa-mir-4743-5p ; hsa-mir-6847-3p ; hsa-mir-6811-3p ; hsa-mir-214-5p ; hsa-mir-5693 ; hsa-mir-4433a-3p ; hsa-mir-4459 ; hsa-mir-4768-3p ; hsa-mir-383-3p ; hsa-mir-3681-3p ; hsa-mir-216a-3p ; hsa-mir-128-3p ; hsa-mir-4695-5p ; hsa-mir-6749-3p ; hsa-mir-4764-3p ; hsa-mir-1910-5p ; hsa-mir-1264 ; hsa-mir-6750-3p ; hsa-mir-212-3p ; hsa-mir-132-3p ; hsa-mir-1228-3p ; hsa-mir-7107-5p ; hsa-mir-3973 ; hsa-mir-1234-3p ; hsa-mir-1295b-3p ; hsa-mir-640 ; hsa-mir-324-5p ; hsa-mir-4733-5p ; hsa-mir-6867-3p ; hsa-mir-4713-5p ; hsa-mir-377-3p ; hsa-mir-2276-3p ; hsa-mir-4532 ; hsa-mir-1247-3p ; hsa-mir-7108-3p ; hsa-mir-4258 ; hsa-mir-6796-3p ; hsa-mir-498 ; hsa-mir-4279 ; hsa-mir-3157-5p ; hsa-mir-23b-5p ; hsa-mir-23a-5p ; hsa-mir-1976 ; hsa-mir-3653-5p ; hsa-mir-1266-3p ; hsa-mir-25-3p ; hsa-mir-3160-3p ; hsa-mir-32-5p ; hsa-mir-363-3p ; hsa-mir-367-3p ; hsa-mir-4487 ; hsa-mir-495-5p ; hsa-mir-5186 ; hsa-mir-558 ; hsa-mir-6087 ; hsa-mir-92a-3p ; hsa-mir-92b-3p

Nearest miRNA

hsa-mir-10b/Upstream/14107047; hsa-mir-1244-1/Downstream/3542969;

Nearest TSS

Nearest CpG islands

None/Target, chr2-CpG: 135/Upstream/709, chr2-CpG: 73/Downstream/87667

Upstream sequence

TTTGGGTCTGCAAATATCTATGCTGTACCAATTCAAGTTCAGAAAATGATGAAATTTAGAGCCATTGAACATTGGCTTAAATGGCTCTGAATTAAAATAA

Downstream sequence

GGGACTTCCTGAAATCTTATTTTCTGAGAAACTAAACAATTTTAGTGGTTCTTGAATTTTTGGTGATTTTAAAATGATACTCTTCTTTGATCAGCTCATA

Target sequence

GAAAGTTGAAAAGTAGCTGAACTGCTGGAATTGACCATACACCTTCTTAAATGTTCTTTTCCGAGCAGGTAAATGGATTAGACTAGAATCTTGCAACTACACAATCA