VISDB Viral Integration Site DataBase

VIS ID

TVIS10016302

Fusion event

HBV-FN1 integration

Validated

No

Detection method

WGS

Data source

Curated

Sample type

Disease

Hepatocellular carcinoma (HCC)

Quality evaluation

Good

Reported year

2012

PubMed ID

Virus name

HBV

Reference genome

Start

402

End

584

Orient

-

Integrated sequence

TTCCTCTTCATCCTGCTGCTATGCCTCATCTTCTTGTTGGTTCTTCTGGACTATCAAGGTATGTTGCCCGTTTGTCCTCTAATTCCAGGATCCTCAACAACCAGCACGGGACCATGCCGGACCTGCATGACTACTGCTCAAGGAACCTCTATGTATCCCTCCTGTTGCTGTACCAAACCTTCG

Chromosome

chr2

Cytoband

q35

Reference genome

Start

End

216296515/215431792 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-200c-3p ; hsa-mir-200b-3p ; hsa-mir-1-3p ; hsa-let-7g-5p ; hsa-mir-26b-5p ; hsa-mir-615-3p ; hsa-mir-218-5p ; hsa-mir-140-3p

Nearest miRNA

hsa-mir-10b/Upstream/1673460; hsa-mir-1244-1/Downstream/2468721;

Nearest TSS

Nearest CpG islands

None/Target, chr2-CpG: 135/Upstream/119210, chr2-CpG: 43/Downstream/3752

Nearby gene

ATIC(-81965) ; LINC00607(+179824) ;

Upstream sequence

TTCTTTTTCCACTTTTATGAAATTACAAAAACAAAGCCCAAAGCTCTTACCTGCACTGGCTTGGTGAAAGTCAGCTTCCTCCCCTGCCCCATCAATAGCA

Downstream sequence

TAAGCATCCCAGCTCTTGCTCAGCCCTAAGACTCACACACCTATGGGCTTGCAGGTCCATTCTCCTTTTCCATTACCAAGACACACACACTCTAACATGT

Target sequence

GTTAAGACTTCTATGTGTAGTCAGTACTTTTTGATCTAACTCCTGTAAGAAGACTATGGATTATATAATAATTCATTATTTCAAACAAAATTCCCATTTCTTTATTGGTTTTCACTGGAATTCAGGTCTATGACCTATGTAGATGTGATTCTGGTCCAACCCCACATTAGAAC