VISDB Viral Integration Site DataBase

VIS ID

TVIS10016303

Fusion event

HBV-FN1 integration

Validated

No

Detection method

WGS

Data source

Curated

Sample type

Disease

Hepatocellular carcinoma (HCC)

Quality evaluation

Good

Reported year

2012

PubMed ID

Virus name

HBV

Reference genome

Start

616

End

873

Orient

-

Integrated sequence

CATCCTGGGCTTTCGGAAAATTCCTATGGGAGTGGGCCTCAGCCCGTTTCTCCTGGCTCAGTTTACTAGTGCCATTTGTTCAGTGGTTCGTAGGGCTTTCCCCCACTGTTTGGCTTTCAGTTATATGGATGATGTGGTATTGGGGGCCAAGTCTGTACAGCATCTTGAGTCCCTTTTTACCGCTGTTACCAATTTTCTTTTGTCTTTGGGTATACATTTAAACCCTAACAAAACAAAGAGATGGGGTTACTCTCT

Chromosome

chr2

Cytoband

q35

Reference genome

Start

End

216297998/215433275 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-200c-3p ; hsa-mir-200b-3p ; hsa-mir-1-3p ; hsa-let-7g-5p ; hsa-mir-26b-5p ; hsa-mir-615-3p ; hsa-mir-218-5p ; hsa-mir-140-3p

Nearest miRNA

hsa-mir-10b/Upstream/1675060; hsa-mir-1244-1/Downstream/2467238;

Nearest TSS

Nearest CpG islands

None/Target, chr2-CpG: 135/Upstream/120810, chr2-CpG: 43/Downstream/2269

Nearby gene

ATIC(-83502) ; LINC00607(+178287) ;

Upstream sequence

TATTCCCTTAGAACCTTTCCATGTTATCCTTTATCTTTATGCAATGTTTCCCATATGTCAGCCATTCATGGCCATTCACCATCCCATTTTTTGTTATGAG

Downstream sequence

AATTCATATTTGATATTTTGGCATCATTTTACACAATCTCTTCCTTACTTGCGATGGTACAGCTTATTCTCCCTCGCCCAGCCCCGATGCAGGTACAGTC

Target sequence

AAAGTTCGGAATATCCAGTCATGGATAACAGAAAATGACAGTGATGGTAACAGAGA