ALB _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10016327
Fusion event
HBV-ALB integration
Validated
No
Detection method
RNA-Seq
Data source
Curated
Sample type
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Good
Reported year
2012
PubMed ID
Virus Sequence
Virus name
HBV
Reference genome
Start
897
End
907
Orient
+
Integrated sequence
GTTATGGGTCC
Host Sequence
Chromosome
chr4
Cytoband
q13.3
Reference genome
End
74283386/73417669 (Hg38)
Orient
-
Location type
Intronic
Target gene
miRNAs that regulate target gene
Nearest miRNA
hsa-mir-12113/Upstream/7140636; hsa-mir-1243/Downstream/3155899;
Upstream sequence
CCTTTGGGCACGTGTGTCATGCAGAAATTGGGGTTGTGCCAAAGTGTAGGTGAAAAGCCCAGGCAAGTACAGGACTTTGGTTGAAGCACTGCAACATGCC
Downstream sequence
GTGAGTCtttaaaaaaatataataaattaataatgaaaaaattttaCCTTTAGATATTGATAATGCTAGCTTTCATAAGCAGAAGGAAGTAAtgtgtgtg
Target sequence
GTGTCAACTCCAACTCTTGTAGAGGTCTCAAGAAACCTAGGAAAAGTGGGCAGCAAATGTTGTAAACATCCTGAAGCAAAAAGAATGCCCTGTGCAGAAGACTAT
Reference
Jiang, S., et al. Re-evaluation of the carcinogenic significance of hepatitis B virus integration in hepatocarcinogenesis. PLoS One ,2012, 7(9): e40363.
Curate