hsa-mir-3944-5p _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10016329
Fusion event
HBV-chr4 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Good
Reported year
2012
PubMed ID
22267523
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Start
1665
End
1700
Orient
-
Integrated sequence
TCTTGGACTCTCAGCAATGTCAACGACCGACCTTGA
Host Sequence
Chromosome
chr4
Cytoband
q23
Reference genome
GRCh37/hg19
Start
100056151/99135000 (Hg38)
End
100056186/99135035 (Hg38)
Orient
+
Location type
Intronic
Target gene
ADH4 ; LOC100507053
miRNAs that regulate target gene
hsa-mir-4666a-5p ; hsa-mir-8068 ; hsa-mir-143-5p ; hsa-mir-3944-5p ; hsa-mir-5087 ; hsa-mir-4764-5p ; hsa-mir-657 ; hsa-mir-3665 ; hsa-mir-4722-5p ; hsa-mir-1286 ; hsa-mir-873-5p ; hsa-mir-4748 ; hsa-mir-4464 ; hsa-mir-6841-5p ; hsa-mir-1265 ; hsa-mir-376c-3p
Nearest miRNA
hsa-mir-12113/Upstream/137540; hsa-mir-1243/Downstream/2105760;
Nearest TSS
ENST00000502981/Upstream/46049; ENST00000506454/Downstream/1502;
Nearest CpG islands
None/Target, chr4-CpG: 46/Upstream/46022, chr4-CpG: 40/Downstream/428535
Nearby gene
ADH5(-46255) ; PCNAP1(+25564) ;
Upstream sequence
cagaaatttcccccaggtcctgggcaggtccagagatgctgcctgtgagccagggattggagtaaaaaaccttagaaacataccttatgttctattctac
Downstream sequence
ctggagctatcacaatgaacaacagagagttcttgccctcaaggaacaaatagtacaataggacaaaaaaataaatgggagatttctctatagtgtgata
Target sequence
aagctcctgttatgtgccagggacaattccaggct
Reference
Jiang, S., et al. Re-evaluation of the carcinogenic significance of hepatitis B virus integration in hepatocarcinogenesis. PLoS One ,2012, 7(9): e40363.
Curate