EPB41L4A _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10016341
Fusion event
HBV-EPB41L4A integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Good
Reported year
2012
PubMed ID
Virus Sequence
Virus name
HBV
Reference genome
Start
926
End
961
Orient
-
Integrated sequence
ATACAAAAAATCAAAGAATGTTTTAGAAAACTTCCT
Host Sequence
Chromosome
chr5
Cytoband
q22.1
Reference genome
End
111477810/112142113 (Hg38)
Orient
+
Location type
Intronic
Target gene
miRNAs that regulate target gene
Nearest miRNA
hsa-mir-10397/Upstream/1628163; hsa-mir-103a-1/Downstream/4113630;
Upstream sequence
gtggaataggtagagagttgcccacagtggtctggaaaagagaagaggactgaccaggtgacccaaattttacctgaggcatcctcctggaaaaattctg
Downstream sequence
TTGGAGAAGGCTGGCTCTGGGATATGCACAGAGCCTTATACACTAGGTTCTAAGACTCCTCAACTTAAATAATAGCCACTTACCACTACTCCTCTCCTTC
Target sequence
TCTCTCTTCCCCATATTTTACCCTTTTGAGTTTCT
Reference
Jiang, S., et al. Re-evaluation of the carcinogenic significance of hepatitis B virus integration in hepatocarcinogenesis. PLoS One ,2012, 7(9): e40363.
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