CHN2 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10016358
Fusion event
HBV-CHN2 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Good
Reported year
2012
PubMed ID
22267523
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Start
30
End
65
Orient
+
Integrated sequence
GATCCCAGAGTGAGAGGCCTGTATTTCCCTGCTGGT
Host Sequence
Chromosome
chr7
Cytoband
p14.3
Reference genome
GRCh37/hg19
Start
29405131/29365515 (Hg38)
End
29405166/29365550 (Hg38)
Orient
-
Location type
Intronic
Target gene
CHN2
Nearest miRNA
hsa-mir-1183/Upstream/2195952; hsa-mir-10399/Downstream/315184;
Nearest TSS
ENST00000635602/Upstream/29808; ENST00000491856/Downstream/31098;
Nearest CpG islands
None/Target, chr7-CpG: 39/Upstream/170085, chr7-CpG: 17/Downstream/197943
Upstream sequence
cAGTCCtctttgtcttaaccttcacaaggaaactttgaaatgatacccactttttgttactgctttcctcaggccttttctgtctttaaaaccaacctct
Downstream sequence
aaggacatgatgataaggggcagataacaagaggtagagaaggaggagaggaagatgtcatagacagaaggaatagcatacgcaaaggccctgaggttga
Target sequence
aagaaagactccttcatgaagttgatatttgaact
Reference
Jiang, S., et al. Re-evaluation of the carcinogenic significance of hepatitis B virus integration in hepatocarcinogenesis. PLoS One ,2012, 7(9): e40363.
Curate