VISDB Viral Integration Site DataBase

VIS ID

TVIS10016359

Fusion event

HBV-PURB integration

Validated

No

Detection method

WGS

Data source

Curated

Sample type

Disease

Hepatocellular carcinoma (HCC)

Quality evaluation

Good

Reported year

2012

PubMed ID

Virus name

HBV

Reference genome

Start

2675

End

2710

Orient

+

Integrated sequence

TACCATTGGATAAGGGTATTAAACCTTATTATCCAG

Chromosome

chr7

Cytoband

p13

Reference genome

Start

End

44924095/44884496 (Hg38)

Orient

-

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-21-5p ; hsa-mir-320b ; hsa-mir-935 ; hsa-mir-92a-3p ; hsa-mir-519c-3p ; hsa-mir-519b-3p ; hsa-mir-519a-3p ; hsa-mir-3611 ; hsa-mir-30c-2-3p ; hsa-mir-30c-1-3p ; hsa-mir-5692a ; hsa-mir-6788-5p ; hsa-mir-302b-5p ; hsa-mir-302d-5p ; hsa-mir-548a-3p ; hsa-mir-548e-3p ; hsa-mir-548f-3p ; hsa-mir-548ar-3p ; hsa-mir-548az-3p ; hsa-mir-548at-3p ; hsa-mir-548ay-3p ; hsa-mir-150-5p ; hsa-mir-532-3p ; hsa-mir-1303 ; hsa-mir-2116-3p ; hsa-mir-3607-3p ; hsa-mir-6807-5p ; hsa-mir-545-5p ; hsa-mir-151a-3p ; hsa-mir-567 ; hsa-mir-548c-3p ; hsa-mir-450b-5p ; hsa-mir-1827 ; hsa-mir-5096 ; hsa-mir-4722-3p ; hsa-mir-6727-3p ; hsa-mir-6747-3p ; hsa-mir-944 ; hsa-mir-4699-3p ; hsa-mir-520f-5p ; hsa-mir-136-5p ; hsa-mir-218-5p ; hsa-mir-20a-5p ; hsa-mir-106b-5p ; hsa-mir-578 ; hsa-mir-526b-5p ; hsa-mir-570-5p ; hsa-mir-548ba ; hsa-mir-548ai ; hsa-mir-548ag ; hsa-mir-6516-5p ; hsa-mir-455-3p ; hsa-mir-6499-3p ; hsa-mir-1233-3p ; hsa-mir-1225-3p ; hsa-mir-1247-3p ; hsa-mir-3940-3p ; hsa-mir-3680-3p ; hsa-mir-557 ; hsa-mir-507 ; hsa-mir-3978 ; hsa-mir-542-3p ; hsa-mir-4504 ; hsa-mir-4501 ; hsa-mir-548ah-5p ; hsa-mir-3609 ; hsa-mir-4463 ; hsa-mir-4499 ; hsa-mir-5582-3p ; hsa-mir-4713-5p ; hsa-mir-4477a ; hsa-mir-1257 ; hsa-mir-7157-5p ; hsa-mir-4310 ; hsa-mir-103a-3p ; hsa-mir-107 ; hsa-mir-1299 ; hsa-mir-202-5p ; hsa-mir-5687 ; hsa-mir-337-3p ; hsa-mir-145-3p ; hsa-mir-6128 ; hsa-mir-875-3p ; hsa-mir-1298-3p ; hsa-mir-3126-3p ; hsa-mir-191-5p ; hsa-mir-651-5p ; hsa-mir-6876-5p ; hsa-mir-4476 ; hsa-mir-5684 ; hsa-mir-618 ; hsa-mir-548as-3p ; hsa-mir-548t-3p ; hsa-mir-548ap-3p ; hsa-mir-548aa ; hsa-mir-7-5p ; hsa-mir-582-5p ; hsa-mir-144-3p ; hsa-mir-101-3p ; hsa-mir-3912-5p ; hsa-mir-197-3p ; hsa-mir-411-5p ; hsa-mir-6755-3p ; hsa-mir-198 ; hsa-mir-6832-5p ; hsa-mir-193b-5p ; hsa-mir-4716-5p ; hsa-mir-4673 ; hsa-mir-4645-5p ; hsa-mir-4478 ; hsa-mir-4419b ; hsa-mir-3929 ; hsa-mir-483-5p ; hsa-mir-4279 ; hsa-mir-6783-3p ; hsa-mir-1343-3p ; hsa-mir-1206 ; hsa-mir-23b-5p ; hsa-mir-23a-5p ; hsa-mir-6778-3p ; hsa-mir-1976 ; hsa-mir-3653-5p ; hsa-mir-6742-3p ; hsa-mir-6852-5p ; hsa-mir-939-3p ; hsa-mir-6814-5p ; hsa-mir-5697 ; hsa-mir-562 ; hsa-mir-4659b-3p ; hsa-mir-4659a-3p ; hsa-mir-2053 ; hsa-mir-5047 ; hsa-mir-1301-3p ; hsa-mir-8068 ; hsa-mir-4778-3p ; hsa-mir-4307 ; hsa-mir-6859-5p ; hsa-mir-3916 ; hsa-mir-3125 ; hsa-mir-4796-3p ; hsa-mir-519d-3p ; hsa-mir-93-5p ; hsa-mir-526b-3p ; hsa-mir-20b-5p ; hsa-mir-106a-5p ; hsa-mir-17-5p ; hsa-mir-548s ; hsa-mir-3926 ; hsa-mir-4786-5p ; hsa-mir-3190-5p ; hsa-mir-6827-3p ; hsa-mir-340-3p ; hsa-mir-6771-3p ; hsa-mir-665 ; hsa-mir-887-5p ; hsa-mir-6780a-5p ; hsa-mir-6779-5p ; hsa-mir-3689c ; hsa-mir-3689b-3p ; hsa-mir-3689a-3p ; hsa-mir-30b-3p ; hsa-mir-1273h-5p ; hsa-mir-6799-5p ; hsa-mir-6883-5p ; hsa-mir-6785-5p ; hsa-mir-4728-5p ; hsa-mir-149-3p ; hsa-mir-7106-5p ; hsa-mir-4722-5p ; hsa-mir-6884-5p ; hsa-mir-485-5p ; hsa-mir-940 ; hsa-mir-6893-5p ; hsa-mir-6808-5p ; hsa-mir-181d-5p ; hsa-mir-181c-5p ; hsa-mir-181a-5p ; hsa-mir-181b-5p

Nearest miRNA

hsa-mir-1183/Upstream/2661; hsa-mir-10399/Downstream/12071289;

Nearest TSS

Nearest CpG islands

chr7-CpG: 124/Target, None/Upstream, None/Downstream

Nearby gene

H2AFV(-36335) ; MYO1G(+78199) ;

Upstream sequence

attatgatctgttccactcaccttcaacttttaagtttcctgaggaaatgagacaaagcagaattttgcaaaagtagttcctggatgggttgattacagt

Downstream sequence

TTCCTGGATTTCTTTCATCTCATCCGCATACCGGCAAAAGGCGCCTCCGAACTTGCCCCAGGCTTTGAAGGGTACGGTGATGGCATTGCGGTAGGACGGC

Target sequence

CCACCACGTCGCTCATAAAGCTTATCCCTCTGTCG