Basic Information
VIS ID
TVIS10016369
Fusion event
HBV-chr8 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Good
Reported year
2012
PubMed ID
22267523
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Start
1799
End
1834
Orient
-
Integrated sequence
TCTGCGCACCAGCACCATGCAACTTTTTCACCTCTG
Host Sequence
Chromosome
chr8
Cytoband
q12.1
Reference genome
GRCh37/hg19
Start
58299498/57386939 (Hg38)
End
58299533/57386974 (Hg38)
Orient
+
Nearest miRNA
hsa-mir-124-1/Upstream/14490664; hsa-mir-10400/Downstream/4327814;
Nearest TSS
ENST00000518652/Upstream/43132; ENST00000520370/Downstream/105910;
Nearest CpG islands
None/Target, chr8-CpG: 109/Upstream/106614, chr8-CpG: 99/Downstream/607417
Nearby gene
RPL30P10(+5607) ;
Upstream sequence
gtgaaaccctgtctctactaaaaatacagaaaattagctgggccatggtggtgcacatcctgtaatcttagttacttgggaggctgaagcatgagaatca
Downstream sequence
aatgaagaagctgattctaaaatttttgtgataatgcaaaggggctagaatagccaagcaattttgaagaagaacaaaattgaaagaatttcttaactgg
Target sequence
gcaaatccaataaaaaattccaggtattttgtaaa
Reference
Jiang, S., et al. Re-evaluation of the carcinogenic significance of hepatitis B virus integration in hepatocarcinogenesis. PLoS One ,2012, 7(9): e40363.
Curate