SYTL5 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10016380
Fusion event
HBV-SYTL5 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Good
Reported year
2012
PubMed ID
22267523
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Start
543
End
578
Orient
+
Integrated sequence
GGAACCTCTATGTATCCCTCCTGTTGCTGTACCAAA
Host Sequence
Chromosome
chrX
Cytoband
p11.4
Reference genome
GRCh37/hg19
Start
37782054/37922801 (Hg38)
End
37782089/37922836 (Hg38)
Orient
+
Location type
Intronic
Target gene
SYTL5
Nearest miRNA
hsa-mir-23c/Upstream/5281242; hsa-let-7f-2/Downstream/101059;
Nearest TSS
ENST00000429181/Upstream/16654; ENST00000341016/Downstream/67981;
Nearest CpG islands
None/Target, chrX-CpG: 62/Upstream/16797, chrX-CpG: 48/Downstream/297602
Upstream sequence
TCTGCCCAGGTGCAGGGAATATTTAGGGTCGTTGCATTGGAGGGAAATGGCTTCCTCTCAGATTCAGAGATCCCTAAAGTTGTAGAATCAGAACCTTAAA
Downstream sequence
CACTTAGTATCACATACATAACAGCTTTTCTTTCAGTCACCCCTGCTTCCTAGTAACTGGTTCTCCATGATActactacctctctctgacccatttcatc
Target sequence
GTCACAAGCTTAACGTGAATTTTCTCTTGTCCCCT
Reference
Jiang, S., et al. Re-evaluation of the carcinogenic significance of hepatitis B virus integration in hepatocarcinogenesis. PLoS One ,2012, 7(9): e40363.
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