Basic Information
VIS ID
TVIS10016386
Fusion event
HBV-chrX integration
Validated
No
Detection method
RNA-Seq
Data source
Curated
Sample type
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Good
Reported year
2012
PubMed ID
Virus Sequence
Virus name
HBV
Reference genome
Start
1783
End
1805
Orient
+
Integrated sequence
TGTAGGCATAAATTGGTCTGCGC
Host Sequence
Chromosome
chrX
Cytoband
q25
Reference genome
End
126560819/127426838 (Hg38)
Orient
+
Nearest miRNA
hsa-let-7f-2/Upstream/6055557; hsa-mir-105-1/Downstream/6742540;
Upstream sequence
TAAGTTTTTCATTGTTCTTTTGTGTATGTTTGTTTTTATTAAATACTAATTAGAATCAAAAGGCTGTTCAAAatatgaaaggtatgaataataatatgat
Downstream sequence
tagcagcataggcagtagtaacttactacattataaattattttaaaggcacaggcaacatgatttgctgacagattttatatgaagcaaaatacaaaga
Target sequence
ggaattattgacatttgaagcaggtaattctgtgttgtatatgtcttgaggtgatcaagtgctctgtgcattgtaggatatttagcagaacttctgaccccccacccaccagaggccagtagcaaccctgcccctagttgtggcaactgaaaatgtctcccaacattgccaaatgtcctctggggcgaaaaatcaccttcagtagtcagaactgctggcccaggacaa
Reference
Jiang, S., et al. Re-evaluation of the carcinogenic significance of hepatitis B virus integration in hepatocarcinogenesis. PLoS One ,2012, 7(9): e40363.
Curate