Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10016398
Fusion event
HBV-FCRL1 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Good
Reported year
2012
PubMed ID
Virus Sequence
Virus name
HBV
Reference genome
Start
80
End
115
Orient
+
Integrated sequence
AACAGTAAACCCTGTTCTGACTACTGCCTCTCCCTT
Host Sequence
Chromosome
chr1
Cytoband
q23.1
Reference genome
End
157768599/157798809 (Hg38)
Orient
+
Location type
Intronic
Target gene
Nearest miRNA
hsa-mir-101-1/Upstream/862530; hsa-mir-1182/Downstream/2101170;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/603429, chr1-CpG: 28/Downstream/180121
Upstream sequence
TAATAACTGCTGATAGAAAATGAGTGATTCTTCCAgccaggcaccataatacaggctacatgtgaattttaatccttaaaacaaagttattaggtagtta
Downstream sequence
TGTTCATTCCTGTCTGTCTTACATTCCAGAAATGTACATGTATCTTACCTACCCTAAAATACTTTAAAACTCTCAAGAGTTTTTTATATTTTCACATTTG
Target sequence
AACATCTAAAGAACTTCACCAATAACTGTTCAGTA
Reference
Jiang, S., et al. Re-evaluation of the carcinogenic significance of hepatitis B virus integration in hepatocarcinogenesis. PLoS One ,2012, 7(9): e40363.