AGBL1 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10016439
Fusion event
HBV-AGBL1 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Good
Reported year
2012
PubMed ID
22267523
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Start
3189
End
3224
Orient
+
Host Sequence
Chromosome
chr15
Cytoband
q25.3
Reference genome
GRCh37/hg19
Start
87313495/86770264 (Hg38)
End
87313530/86770299 (Hg38)
Orient
-
Location type
Intronic
Target gene
AGBL1
Nearest miRNA
hsa-mir-10393/Upstream/944534; hsa-mir-11181/Downstream/1175907;
Nearest TSS
ENST00000557528/Upstream/139128; ENST00000560803/Downstream/218127;
Nearest CpG islands
None/Target, chr15-CpG: 55/Upstream/929380, chr15-CpG: 36/Downstream/1485124
Nearby gene
KLHL25(-975306) ; LINC00052(+806664) ;
Upstream sequence
GAGGGGCAAGGGCTATAGGAGCGTCTACATAAATCAACACTGAGAATGTATTCCATGAATGAAAGTAACACAAAAGCTGTTGGCAGGCAAGGGTGGAACC
Downstream sequence
tccatggggttgattttgcatccccgcacaggagacatttggcaatgtctggacacggtttttttatcttcatgactgggaaggtagggttggttactaa
Target sequence
agatacataaataactatcacagtgcagtggtccc
Reference
Jiang, S., et al. Re-evaluation of the carcinogenic significance of hepatitis B virus integration in hepatocarcinogenesis. PLoS One ,2012, 7(9): e40363.
Curate