hsa-mir-4753-3p _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10016444
Fusion event
HBV-RBFOX1 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Good
Reported year
2012
PubMed ID
22267523
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Start
994
End
1029
Orient
-
Integrated sequence
ACGAATTGTGGGTCTTTTGGGTTTTGCTGCCCCTTT
Host Sequence
Chromosome
chr16
Cytoband
p13.3
Reference genome
GRCh37/hg19
Start
6006462/5956461 (Hg38)
End
6006497/5956496 (Hg38)
Orient
-
Location type
Intronic
Target gene
RBFOX1
miRNAs that regulate target gene
hsa-mir-30a-5p ; hsa-let-7b-5p ; hsa-mir-3157-5p ; hsa-mir-153-5p ; hsa-mir-935 ; hsa-mir-4691-3p ; hsa-mir-1305 ; hsa-mir-6809-3p ; hsa-mir-6833-3p ; hsa-mir-4768-5p ; hsa-mir-498 ; hsa-mir-4753-3p ; hsa-mir-627-3p ; hsa-mir-6832-3p ; hsa-mir-562
Nearest miRNA
hsa-mir-1225/Upstream/323895; hsa-mir-11401/Downstream/5349944;
Nearest TSS
ENST00000527434/Upstream/340265; ENST00000548749/Downstream/62598;
Nearest CpG islands
None/Target, chr16-CpG: 29/Upstream/716076, chr16-CpG: 127/Downstream/62417
Nearby gene
EEF2KMT(-858673) ; RBFOX1(+62669) ;
Upstream sequence
AGATTTTTTTCTCTTCACTTTTCTCTTCCTGTACCcacagctccggtccccatctctcccctttcccctaactttatttttgtttctgagcacttatcaa
Downstream sequence
tcctgttaaaaatgcaaatcactgggcttcctctctgagattctgattaagttagatgtggggtggAAAACAGGCAGTGGGCTGCTGGTGCTTGTGATAG
Target sequence
ACTGTACAGTCAAATTTACATgaatgccctggagc
Reference
Jiang, S., et al. Re-evaluation of the carcinogenic significance of hepatitis B virus integration in hepatocarcinogenesis. PLoS One ,2012, 7(9): e40363.
Curate