hsa-mir-6777-3p _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10016465
Fusion event
HBV-C2orf91 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Good
Reported year
2012
PubMed ID
22267523
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Start
1272
End
1307
Orient
-
Integrated sequence
CTGCGGAACTCCTAGCCGCTTGTTTTGCTCGCAGCA
Host Sequence
Chromosome
chr2
Cytoband
p21
Reference genome
GRCh37/hg19
Start
42179208/41952068 (Hg38)
End
42179243/41952103 (Hg38)
Orient
-
Location type
Intronic
Target gene
C2orf91
miRNAs that regulate target gene
hsa-mir-3941 ; hsa-mir-603 ; hsa-mir-362-3p ; hsa-mir-329-3p ; hsa-mir-8485 ; hsa-mir-885-5p ; hsa-mir-6512-5p ; hsa-mir-6845-3p ; hsa-mir-2116-3p ; hsa-mir-6777-3p ; hsa-mir-508-5p
Nearest miRNA
hsa-mir-1301/Upstream/6480582; hsa-mir-10b/Downstream/5425572;
Nearest TSS
ENST00000437798/Upstream/18345; ENST00000485578/Downstream/1192;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/110614, chr2-CpG: 139/Downstream/95187
Nearby gene
LOC388942(-58022) ; PKDCC(+95952) ;
Upstream sequence
caaagcacctccctcccacgtaccagcctggcagctgatgtgatcagacctctgcctcagcaaaatctcaaattattacaggtcaggagccttctgcaaa
Downstream sequence
ACATAAAGTGGACTGTGTACATGCACTCTTTAGGAGCAGTCTTTTGGCCCCAAACTAGATTCTATGGGAATTCCCAGGTAAGATGCTTCTCCAAAATGAA
Target sequence
ggaagcCATTTTGATTATGATTATCAAAGTCTAGA
Reference
Jiang, S., et al. Re-evaluation of the carcinogenic significance of hepatitis B virus integration in hepatocarcinogenesis. PLoS One ,2012, 7(9): e40363.
Curate