TEX264 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10016492
Fusion event
HBV-TEX264 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Good
Reported year
2012
PubMed ID
22267523
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Start
3046
End
3081
Orient
-
Integrated sequence
GAGCCCTCAGGCTCAGGGCATACTACAAACTTTGCC
Host Sequence
Chromosome
chr3
Cytoband
p21.2
Reference genome
GRCh37/hg19
Start
51735032/51701016 (Hg38)
End
51735067/51701051 (Hg38)
Orient
-
Location type
Intronic
Target gene
TEX264
miRNAs that regulate target gene
hsa-mir-877-5p ; hsa-mir-100-5p
Nearest miRNA
hsa-mir-12127/Upstream/1025853; hsa-let-7g/Downstream/567227;
Nearest TSS
ENST00000440867/Upstream/19555; ENST00000419928/Downstream/6019;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/29010, chr3-CpG: 29/Downstream/6057
Upstream sequence
tattattgcctgatttccatccctttgagtatctacccaaatgtggaatttctggatctaacagtgattctggtgtttacttttcaggaattgtcgtact
Downstream sequence
TGTGCCTGTTATTACATTGATGTATTATTTAGCTTCAGAGAGGCGATGAATATTTGATCGTCTTGCACTGGCTGTGGGCAGAGCGAGAGGGAGGGATTTG
Target sequence
TAGGCCGGGAGGTGAAAGGGGGTGATTAGCTGCCT
Reference
Jiang, S., et al. Re-evaluation of the carcinogenic significance of hepatitis B virus integration in hepatocarcinogenesis. PLoS One ,2012, 7(9): e40363.
Curate