Basic Information
VIS ID
TVIS10016537
Fusion event
HBV-chr1 integration
Validated
No
Detection method
RNA-Seq
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Good
Reported year
2012
PubMed ID
22267523
Virus Sequence
Virus name
HBV
Reference genome
V01460.1
Start
3154
End
3164
Orient
+
Integrated sequence
TCTTGCAGAGT
Host Sequence
Chromosome
chr1
Cytoband
q31.1
Reference genome
GRCh37/hg19
Start
187812960/187843829 (Hg38)
End
187813081/187843950 (Hg38)
Orient
-
Fragile sites / regions
FRA1K
Nearest miRNA
hsa-mir-101-1/Upstream/7405439; hsa-mir-1182/Downstream/4872378;
Nearest TSS
ENST00000473358/Upstream/202213; ENST00000569873/Downstream/374450;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/1162880, chr1-CpG: 56/Downstream/4964552
Upstream sequence
tgcattcctagaaactcaacttagtgtttagtacatatagctactcagtatttatttactgagtgaaggaaACATGGTTGAGATGGGAGAGGCAGGTAAC
Downstream sequence
GAATCCGTGGACCCTTGTGTATCTTCTTATTCCTGGCATAATGTCTCCAATGTATCCTGCACATACCCGACAGTGATAATTTCTTTAGAAATTAGCCTCT
Target sequence
AGAGTGAACCCTTACTTTTACTACACAAAACTTAACTGGGAATAATGTCCATATATCTTTCTTTAGCATAGTACATACTCTACtaaataaaatatttaaataaattGCAGTTGGTCACTGT
Reference
Jiang, S., et al. Re-evaluation of the carcinogenic significance of hepatitis B virus integration in hepatocarcinogenesis. PLoS One ,2012, 7(9): e40363.
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