Basic Information
VIS ID
TVIS10016542
Fusion event
HBV-chr13 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2012
PubMed ID
22267523
Virus Sequence
Virus name
HBV
Reference genome
V01460.1
Start
1745
Orient
-
Integrated sequence
GTAAAGAGAGGTGCGCCCCGTGGTCGGTCGGAACGGCAGACGGAGAAGGGGACGAGAGAGTCCCAAGCGACCCCGAGAAGGGTCGTCCGCAGGATTCAGC| |GCCGACGGGACGTAAACAAAGGACGTCCCGCGCAGGATCCAGTTGGCAGCACAGCCTAGCAGCCATGGAAACGATGTATATTTGCGGGATAGGACAACAG
Host Sequence
Chromosome
chr13
Cytoband
q14.11
Reference genome
GRCh37/hg19
Start
43208443/42634307 (Hg38)
End
43208443/42634307 (Hg38)
Orient
-
Nearest miRNA
hsa-mir-2276/Upstream/1065912; hsa-mir-1267/Downstream/1561822;
Nearest TSS
ENST00000623511/Upstream/60003; ENST00000537894/Downstream/147243;
Nearest CpG islands
None/Target, chr13-CpG: 551/Upstream/361636, chr13-CpG: 38/Downstream/357631
Nearby gene
TNFSF11(-26294) ; FAM216B(+147242) ;
Upstream sequence
gctagttttttacatacattttctttctatttaattccctgtgttgttactcatgtttaatacatgagaaaattaagctggaaaaaagttaaataaATCT
Downstream sequence
AACAGTCTTAAACCAAGTGGTGAACACACGCATATAGTTTAAGTATTTTTACAGCTTTTTGTTTGTCTAAGGTATGTTAAACAtttttcttttttttccc
Reference
Jiang, S., et al. Re-evaluation of the carcinogenic significance of hepatitis B virus integration in hepatocarcinogenesis. PLoS One ,2012, 7(9): e40363.
Curate