VISDB Viral Integration Site DataBase

VIS ID

TVIS10016573

Fusion event

HBV-HTR2A integration

Validated

No

Detection method

WGS

Data source

Curated

Sample type

Disease

Hepatocellular carcinoma (HCC)

Quality evaluation

Normal

Reported year

2012

PubMed ID

Virus name

HBV

Reference genome

Start

468

Orient

+

Integrated sequence

CCCACAAAATGAGGCGCTATGTGTTGTTTCTCTCTTATATAATATACCCGCCTTCCATAGAGTGTGTAAATAGTGTCTAGTTTGGAAGTAATGATTAACT| |AGATGTTCTGGATAATAAGGTTTAATACCCTTATCCAATGGTAAATATTTGGTAACCTTTGGATAAAACCTGGCAGGCATAATCAATTGCAATCTTCTTT

Chromosome

chr13

Cytoband

q14.2

Reference genome

Start

End

47470747/46896612 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-580-3p ; hsa-mir-4303 ; hsa-mir-6761-5p ; hsa-mir-4329 ; hsa-mir-4251 ; hsa-mir-203a-3p

Nearest miRNA

hsa-mir-2276/Upstream/2700412; hsa-mir-1267/Downstream/3099803;

Nearest TSS

Nearest CpG islands

None/Target, chr13-CpG: 551/Upstream/99263, chr13-CpG: 53/Downstream/1104333

Nearby gene

ESD(-99380) ; SUCLA2(+1046043) ;

Upstream sequence

TTTATCATTGTTTCTTTCTTCTTGAAGTCCTGTCTTCTCTTTTCTAGGTTTGGATGATATTATTTCCCCATTGTTAAGAGTTCCTAGAAAACGGCTTGTC

Downstream sequence

ATGGAAACCTTTTCCTGACTTTTCTGTCTCCCCCTAGTCTCACAGTGGGCCCCTCCATCACCCTTCCATCCTCGGGGCCTGCCAGTAGGATGAGGAGCAG