PRR16 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10016593
Fusion event
HBV-PRR16 integration
Validated
No
Detection method
WGS
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2012
PubMed ID
22267523
Virus Sequence
Virus name
HBV
Reference genome
V01460.1
Start
2410
Orient
-
Integrated sequence
AATTTAGAGAGTAACCCCATCTCTTTGTTTTGTTAGGGTTTAAATGTATACCCAAAGACAAAAGAAAATTGGTAACAGCGGTAAAAAGGGACTCAAGATG| |CTGTACAGACTTGGCCCCCAATACCACATCATCCATATAACTGAAAGCCAAACAGTGGGGGAAAGCCCTACGAACCACTGAACAAATGGCACTAGTAAAC
Host Sequence
Chromosome
chr5
Cytoband
q23.1
Reference genome
GRCh37/hg19
Start
119980115/120644420 (Hg38)
End
119980115/120644420 (Hg38)
Orient
+
Location type
Intronic
Target gene
PRR16
Nearest miRNA
hsa-mir-10397/Upstream/1489704; hsa-mir-103a-1/Downstream/8453268;
Nearest TSS
ENST00000502646/Upstream/27283; ENST00000511422/Downstream/136798;
Nearest CpG islands
None/Target, chr5-CpG: 87/Upstream/180047, chr5-CpG: 71/Downstream/1207272
Nearby gene
FAM170A(-1008598) ; FTMT(+1207534) ;
Upstream sequence
CATCGCGGGGGTGGCCGGGGCCAGGGCTTCCCACGTGCGCAGCAGGACGCAGCGCTGCCTGAAACTCGCGCCGCGAGGAGAgggcggggccgcggaaagg
Downstream sequence
TTAATTTTGTTCATATTCTTATTAAAAGAACCTCATGGGATTTGGAAATATATTGGGAAGATACATGGTGAAGGTTAACACAGACAGGGAGTGCAAACAG
Reference
Jiang, S., et al. Re-evaluation of the carcinogenic significance of hepatitis B virus integration in hepatocarcinogenesis. PLoS One ,2012, 7(9): e40363.
Curate