VISDB Viral Integration Site DataBase

VIS ID

TVIS10016600

Fusion event

HBV-TENM1 integration

Validated

No

Detection method

WGS

Data source

Curated

Sample type

Disease

Hepatocellular carcinoma (HCC)

Quality evaluation

Normal

Reported year

2012

PubMed ID

Virus name

HBV

Reference genome

Start

1825

Orient

+

Integrated sequence

GGTCGTCCGCAGGATTCAGCGCCGACGGGACGTAAACAAAGGACGTCCCGCGCAGGATCCAGTTGGCAGCACAGCCTAGCAGCCATGGAAACGATGTATA| |TTTGCGGGATAGGACAACAGAGTTATCAGTCCCGATAATGTTTGCTCCAGACCTGCTGCGAGCAAAACAAGCGGCTAGGAGTTCCGCAGTATGGATCGGC

Chromosome

chrX

Cytoband

q25

Reference genome

Start

End

123884874/124751024 (Hg38)

Orient

-

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-4659b-3p ; hsa-mir-4659a-3p ; hsa-mir-3653-3p ; hsa-mir-3658 ; hsa-mir-4778-3p ; hsa-mir-4698 ; hsa-mir-5680 ; hsa-mir-7154-5p ; hsa-mir-8060 ; hsa-mir-335-3p ; hsa-mir-664b-3p ; hsa-mir-579-3p ; hsa-mir-5696 ; hsa-mir-6516-3p ; hsa-mir-4536-5p ; hsa-mir-6876-3p ; hsa-mir-626 ; hsa-mir-215-3p

Nearest miRNA

hsa-let-7f-2/Upstream/3379971; hsa-mir-105-1/Downstream/9418354;

Nearest TSS

Nearest CpG islands

None/Target, chrX-CpG: 62/Upstream/417677, chrX-CpG: 17/Downstream/451897

Nearby gene

SH2D1A(-377864) ; TEX13C(+569094) ;

Upstream sequence

TGGGACTGGAAAAGATGTATGTAAAATAAGGCCTATTTTTCACTCAGTCTTTTTTTCCCTCTAACTTTATAATTTCTGGAGTTAAGGGGACCATCTTGAG

Downstream sequence

TAATTTATGTAATCTATAGTAACAGTTGTTAGCTTATTTGGTGTGTCATTTTATCCCAAGTTGATGCTGAAAATATCAGAAGAGGCTGCTTGATGGGCTT