Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10016604
Fusion event
HBV-SPAST integration
Validated
Yes
Detection method
invPCR+NAH
Data source
Curated
Sample type
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2008
PubMed ID
Virus Sequence
Virus name
HBV
Reference genome
Not given
Region type
HBV-X
Host Sequence
Chromosome
chr2
Cytoband
p24
Reference genome
Not given
Start
End
(Hg38)
Location type
Intronic
Target gene
miRNAs that regulate target gene
hsa-mir-132-3p ; hsa-mir-32-3p ; hsa-mir-1250-3p ; hsa-mir-335-3p ; hsa-mir-514b-5p ; hsa-mir-513c-5p ; hsa-mir-190a-3p ; hsa-mir-5687 ; hsa-mir-627-3p ; hsa-mir-5011-5p ; hsa-mir-6758-3p ; hsa-mir-153-5p ; hsa-mir-1285-5p ; hsa-mir-665 ; hsa-mir-6780a-5p ; hsa-mir-6779-5p ; hsa-mir-3689c ; hsa-mir-3689b-3p ; hsa-mir-3689a-3p ; hsa-mir-30b-3p ; hsa-mir-1273h-5p ; hsa-mir-1273e ; hsa-mir-6514-3p ; hsa-mir-6771-5p ; hsa-mir-7977 ; hsa-mir-6799-5p ; hsa-mir-6883-5p ; hsa-mir-6785-5p ; hsa-mir-4728-5p ; hsa-mir-149-3p ; hsa-mir-7106-5p ; hsa-mir-7160-5p ; hsa-mir-6811-3p ; hsa-mir-214-5p ; hsa-mir-4722-5p ; hsa-mir-6884-5p ; hsa-mir-485-5p ; hsa-mir-1827 ; hsa-mir-219b-3p ; hsa-mir-3192-5p ; hsa-mir-4649-3p ; hsa-mir-6746-5p ; hsa-mir-4768-3p ; hsa-mir-5690 ; hsa-mir-4478 ; hsa-mir-4419b ; hsa-mir-3929 ; hsa-mir-940 ; hsa-mir-6893-5p ; hsa-mir-6808-5p ; hsa-mir-7851-3p ; hsa-mir-302f ; hsa-mir-490-3p
Nearest CpG islands
None/Target, None/Upstream, None/Downstream
Reference
Toyoda, H., et al. Impact of hepatitis B virus (HBV) X gene integration in liver tissue on hepatocellular carcinoma development in serologically HBV-negative chronic hepatitis C patients.J Hepatol,2008, 48(1): 43-50.