Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10016607
Fusion event
HBV-FDFT1 integration
Validated
Yes
Detection method
invPCR+NAH
Data source
Curated
Sample type
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2008
PubMed ID
Virus Sequence
Virus name
HBV
Reference genome
Not given
Region type
HBV-X
Host Sequence
Chromosome
chr8
Cytoband
p23.1
Reference genome
Not given
Start
End
(Hg38)
Location type
Intronic
Target gene
miRNAs that regulate target gene
hsa-mir-335-5p ; hsa-mir-155-5p ; hsa-mir-26b-5p ; hsa-mir-760 ; hsa-mir-149-5p ; hsa-mir-140-3p ; hsa-mir-3692-3p ; hsa-mir-4269 ; hsa-mir-4514 ; hsa-mir-4692 ; hsa-mir-4742-5p ; hsa-mir-498 ; hsa-mir-6715b-5p ; hsa-mir-6808-5p ; hsa-mir-6893-5p ; hsa-mir-940 ; hsa-mir-1976 ; hsa-mir-2681-5p ; hsa-mir-3653-5p ; hsa-mir-4258 ; hsa-mir-4279 ; hsa-mir-4438 ; hsa-mir-4722-3p ; hsa-mir-4740-3p ; hsa-mir-5095 ; hsa-mir-6727-3p ; hsa-mir-6747-3p ; hsa-mir-6778-3p ; hsa-mir-7151-3p ; hsa-mir-7849-3p
Nearest CpG islands
None/Target, None/Upstream, None/Downstream
Reference
Toyoda, H., et al. Impact of hepatitis B virus (HBV) X gene integration in liver tissue on hepatocellular carcinoma development in serologically HBV-negative chronic hepatitis C patients.J Hepatol,2008, 48(1): 43-50.