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VISDB
Viral Integration Site DataBase
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TVIS10016675
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10016675
Fusion event
HBV-GLT1D1 integration
Validated
Yes
Detection method
Alu PCR and sequencing
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2015
PubMed ID
23842217
Virus Sequence
Virus name
HBV
Reference genome
Not given
Start
1815
Host Sequence
Chromosome
chr12
Cytoband
q24.3
Reference genome
Not given
Start
6768375
End
(Hg38)
Location type
intron
Target gene
GLT1D1
Nearest CpG islands
None/Target, None/Upstream, None/Downstream
Reference
Toyoda, H., et al. Impact of hepatitis B virus integration into liver tissue on the efficacy of peginterferon and ribavirin therapy in hepatitis B virus-negative chronic hepatitis C patients. J Clin Gastroenterol,2014, 48(1): 73-79.
Sample Information
×
Sample name
NT_009755
Sample type
Tumor
Gender
Female
CpG Island Information
×
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