Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10016684
Fusion event
HBV-VPS13D integration
Validated
Yes
Detection method
Alu PCR and sequencing
Data source
Curated
Sample type
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2015
PubMed ID
Virus Sequence
Virus name
HBV
Reference genome
Not given
Start
1575
Host Sequence
Chromosome
chr1
Cytoband
p36.2
Reference genome
Not given
Start
End
(Hg38)
Location type
intron
Target gene
miRNAs that regulate target gene
hsa-mir-132-3p ; hsa-mir-128-3p ; hsa-mir-7-5p ; hsa-mir-342-5p ; hsa-mir-10a-3p ; hsa-let-7e-5p ; hsa-mir-8485 ; hsa-mir-6868-3p ; hsa-mir-6881-3p ; hsa-mir-6780a-3p ; hsa-mir-7111-3p ; hsa-mir-9-3p ; hsa-mir-7106-3p ; hsa-mir-20a-3p ; hsa-mir-6728-3p ; hsa-mir-6817-3p ; hsa-mir-4685-3p ; hsa-mir-4287 ; hsa-mir-3667-3p ; hsa-mir-6769b-3p ; hsa-mir-6734-3p ; hsa-mir-4723-3p ; hsa-mir-3183 ; hsa-mir-5088-3p ; hsa-mir-4429 ; hsa-mir-320d ; hsa-mir-320c ; hsa-mir-320b ; hsa-mir-320a
Nearest CpG islands
None/Target, None/Upstream, None/Downstream
Reference
Toyoda, H., et al. Impact of hepatitis B virus integration into liver tissue on the efficacy of peginterferon and ribavirin therapy in hepatitis B virus-negative chronic hepatitis C patients. J Clin Gastroenterol,2014, 48(1): 73-79.