Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10016697
Fusion event
HBV-TNFRSF10A integration
Validated
Yes
Detection method
Alu PCR and sequencing
Data source
Curated
Sample type
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2015
PubMed ID
Virus Sequence
Virus name
HBV
Reference genome
Not given
Start
1732
Host Sequence
Chromosome
chr8
Cytoband
p21
Reference genome
Not given
Start
End
(Hg38)
Location type
exon
Target gene
miRNAs that regulate target gene
hsa-mir-155-5p ; hsa-mir-16-5p ; hsa-mir-96-5p ; hsa-mir-1271-5p ; hsa-mir-182-5p ; hsa-mir-6736-5p ; hsa-mir-4701-3p ; hsa-mir-1262 ; hsa-mir-183-5p ; hsa-mir-340-5p ; hsa-mir-5002-5p ; hsa-mir-5590-3p ; hsa-mir-142-5p ; hsa-mir-583 ; hsa-mir-186-5p ; hsa-mir-3133 ; hsa-mir-3152-5p ; hsa-mir-4774-3p ; hsa-mir-4524a-3p ; hsa-mir-483-3p ; hsa-mir-5581-5p ; hsa-mir-4297 ; hsa-mir-34a-5p ; hsa-mir-106b-5p ; hsa-mir-1238-5p ; hsa-mir-1270 ; hsa-mir-1273g-3p ; hsa-mir-25-5p ; hsa-mir-3064-3p ; hsa-mir-3174 ; hsa-mir-4252 ; hsa-mir-4327 ; hsa-mir-4459 ; hsa-mir-4481 ; hsa-mir-455-3p ; hsa-mir-4683 ; hsa-mir-4695-5p ; hsa-mir-4715-3p ; hsa-mir-4745-5p ; hsa-mir-4758-5p ; hsa-mir-6087 ; hsa-mir-620 ; hsa-mir-6499-3p ; hsa-mir-6501-5p ; hsa-mir-6516-5p ; hsa-mir-665 ; hsa-mir-6840-3p
Nearest CpG islands
None/Target, None/Upstream, None/Downstream
Nearest cancer related gene
TNFRSF10A(TSG, No orient, 0)
Reference
Toyoda, H., et al. Impact of hepatitis B virus integration into liver tissue on the efficacy of peginterferon and ribavirin therapy in hepatitis B virus-negative chronic hepatitis C patients. J Clin Gastroenterol,2014, 48(1): 73-79.