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VISDB
Viral Integration Site DataBase
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TVIS10016705
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10016705
Fusion event
HBV-CAMTA1 integration
Validated
Yes
Detection method
Alu PCR and sequencing
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2015
PubMed ID
23842217
Virus Sequence
Virus name
HBV
Reference genome
Not given
Start
1310
Host Sequence
Chromosome
chr1
Cytoband
p36.2
Reference genome
Not given
Start
1674987
End
(Hg38)
Location type
intron
Target gene
CAMTA1
miRNAs that regulate target gene
hsa-mir-129-5p
;
hsa-mir-155-5p
;
hsa-mir-218-5p
;
hsa-mir-34a-5p
;
hsa-mir-96-5p
;
hsa-mir-124-3p
;
hsa-mir-17-5p
;
hsa-mir-19a-3p
;
hsa-mir-19b-3p
;
hsa-mir-20a-5p
;
hsa-mir-93-5p
;
hsa-mir-106b-5p
;
hsa-mir-20b-5p
;
hsa-mir-519d-3p
Nearest CpG islands
None/Target, None/Upstream, None/Downstream
Nearest cancer related gene
CAMTA1
(TSG, No orient, 0)
Reference
Toyoda, H., et al. Impact of hepatitis B virus integration into liver tissue on the efficacy of peginterferon and ribavirin therapy in hepatitis B virus-negative chronic hepatitis C patients. J Clin Gastroenterol,2014, 48(1): 73-79.
Sample Information
×
Sample name
NW_001838523
Sample type
Tumor
Gender
Female
CpG Island Information
×
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