hsa-mir-130b-3p _LIHC.png
SLMAP _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10016929
Fusion event
HBV-SLMAP integration
Validated
No
Detection method
Capture-NGS platform
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Good
Reported year
2019
PubMed ID
30070724
Virus Sequence
Virus name
HBV
Subtype
B
Reference genome
NC_003977
Start
2877
End
2965
Integrated sequence
CTCTGGGATTCTTTCCCGACCACCAGTTGGATCCAGCCTTCAGAGCAAACACCGCAAATCCAGATTGGGACTTCAATCCCAACAAGGAC
Host Sequence
Chromosome
chr3
Cytoband
p14.3
Reference genome
GRCh37/hg19
Start
57896486/57910759 (Hg38)
End
57896556/57910829 (Hg38)
Location type
Intron
Target gene
SLMAP
miRNAs that regulate target gene
hsa-mir-130b-3p ; hsa-mir-21-5p ; hsa-mir-19b-3p
Nearest miRNA
hsa-let-7g/Upstream/2058165; hsa-mir-12124/Downstream/2706976;
Nearest TSS
ENST00000440867/Upstream/14418; ENST00000476471/Downstream/1466;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/153496, chr3-CpG: 90/Downstream/97282
Upstream sequence
acaaggtctcatgtgttgtctaggctggtcttgaactcctgggctcaagtaatactctcaccttggcttcccaaagtgctgggattactggcatgagcca
Downstream sequence
AATCACTATTCAGAAGAGAAGGGAGAGTCATTGTACGAGGCCCAAGATACTTGCCCAAAAATATCGCAGAGAAAAACTAGTCTTTGGGGTCCTATTTTTT
Target sequence
AAGAAGGAGCCAATGTTGTTTTAAAATTTTAGCTTGAGAGATAGGTGGGGAAGAAATTAAATAGACAAGT
Reference
Li, C. L., et al.Androgen Receptor Enhances Hepatic Telomerase Reverse Transcriptase Gene Transcription After Hepatitis B Virus Integration or Point Mutation in Promoter Region. Hepatology,2019, 69(2): 498-512.
Curate