Basic Information
VIS ID
TVIS10016930
Fusion event
HBV-chr4 integration
Validated
No
Detection method
Capture-NGS platform
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Good
Reported year
2019
PubMed ID
30070724
Virus Sequence
Virus name
HBV
Subtype
B
Reference genome
NC_003977
Start
2992
End
3083
Integrated sequence
AGCTGGAGCATTCGGGCTGGGTTTCACCCCACCGCACGGAGGCCTTTTGGGGTGGAGCCCTCAGGCTCAGGGCATACTACAAACTTTGCCAG
Host Sequence
Chromosome
chr4
Cytoband
p11
Reference genome
GRCh37/hg19
Start
49615843/49613826 (Hg38)
End
49615900/49613883 (Hg38)
Location type
Intergenic
Nearest miRNA
hsa-mir-12113/Upstream/1961083; hsa-mir-1243/Downstream/3098799;
Nearest TSS
ENST00000502981/Upstream/585134; ENST00000504661/Downstream/2229117;
Nearest CpG islands
None/Target, chr4-CpG: 46/Upstream/89157, chr4-CpG: 177/Downstream/2228718
Upstream sequence
tctgtctcaaaaaaaaaaaaaaaaaaaaaaagaaagaaATCTCTCTAGAGAAAATACTATTAAGAACATATGATAATTAAAATAAAAAAATTGATGAGTT
Downstream sequence
ggatctaaatgacaaaatcctgacccaaatggtacttggcagtaccaagatagactgtatgtcgatcgattgagaaaaggttcaagcctgaaatactata
Target sequence
taatactgctctctcagtaactgatggaacaaccagataaaaatataggaaaaatat
Reference
Li, C. L., et al.Androgen Receptor Enhances Hepatic Telomerase Reverse Transcriptase Gene Transcription After Hepatitis B Virus Integration or Point Mutation in Promoter Region. Hepatology,2019, 69(2): 498-512.
Curate