hsa-mir-4646-5p _LIHC.png
SHROOM3 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10016953
Fusion event
HBV-SHROOM3 integration
Validated
No
Detection method
Capture-NGS platform
Data source
Curated
Sample type
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Good
Reported year
2019
PubMed ID
Virus Sequence
Virus name
HBV
Subtype
B
Reference genome
Start
1947
End
2036
Integrated sequence
CTCTCGTTTTTGCCTTCTGACTTCTTTCCTTCAGTACGAGATCTTCTAGATACCGCCTCAGCTCTGTATCGGGAAGCCTTAGAGTCTCCT
Host Sequence
Chromosome
chr4
Cytoband
q21.1
Reference genome
End
77613334/76692181 (Hg38)
Location type
Intron
Target gene
Nearest miRNA
hsa-mir-12113/Upstream/116457; hsa-mir-1243/Downstream/6061156;
Upstream sequence
GAGACTCCCGCGCCTGCCAGCCGCTCATGCTCGGGTTCCCCAAGCGGAGGGGCTCCGCGTGCAGTGTGATGCCCACTGTCGCCGGCAGAGGGCACCGTCG
Downstream sequence
TGAGCAATGCCTCCATTTCACAGCCTTCAGCTTGTGGGATTTCTTCATGCATGTCAGAAACTAGTTTTCTTATGCTGTTGTAACACCCAAAGAAGGAATA
Target sequence
AGGATCACTGAGAGGGGTTCACTTTCTAGGGAAGGTCATGTCAGAAAGAAGATTGGGAGGTAGAGCCTGGTGGCTGGGCAGTCTTCACCTTGCCTGAA
Reference
Li, C. L., et al.Androgen Receptor Enhances Hepatic Telomerase Reverse Transcriptase Gene Transcription After Hepatitis B Virus Integration or Point Mutation in Promoter Region. Hepatology,2019, 69(2): 498-512.
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