Basic Information
VIS ID
TVIS10016970
Fusion event
HBV-chr13 integration
Validated
No
Detection method
Capture-NGS platform
Data source
Curated
Sample type
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Good
Reported year
2019
PubMed ID
Virus Sequence
Virus name
HBV
Subtype
B
Reference genome
Start
1988
End
2053
Integrated sequence
TCTTCTAGATACCGCCTCAGCTCTGTATCGGGAAGCCTTAGAGTCTCCTGAGCATTGTTCACCTCA
Host Sequence
Chromosome
chr13
Cytoband
q14.3
Reference genome
End
54873865/54299730 (Hg38)
Location type
Intergenic
Nearest miRNA
hsa-mir-15a/Upstream/1489516; hsa-mir-1267/Downstream/12242;
Upstream sequence
taaatatagctacttttgttatctttccttttttaattgcatgcaatatatctttccttctgttcactttcagtctgtctttatagatgtagtgatttct
Downstream sequence
taatctttcttactgtcttcctttgtggtcaactatttttcttctgtggtatgtattaatttaatgcattttcattttagggcatctgttgtagattttt
Target sequence
aggtgacaacttactactgccattttgttgcttgtttcctagttgttttgtaactcttgtcttttttttttttt
Reference
Li, C. L., et al.Androgen Receptor Enhances Hepatic Telomerase Reverse Transcriptase Gene Transcription After Hepatitis B Virus Integration or Point Mutation in Promoter Region. Hepatology,2019, 69(2): 498-512.
Curate