C1orf94 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10017022
Fusion event
HBV-C1orf94 integration
Validated
No
Detection method
Capture-NGS platform
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Good
Reported year
2019
PubMed ID
30070724
Virus Sequence
Virus name
HBV
Subtype
B
Reference genome
NC_003977
Start
2647
End
2737
Integrated sequence
AGGTTTTATCCAAAGGTTACCAAATATTTACCATTGGATAAGGGTATTAAACCTTATTATCCAGAACATCTAGTTAATCATTACTTCCAAA
Host Sequence
Chromosome
chr1
Cytoband
p35.1
Reference genome
GRCh37/hg19
Start
34654566/34188965 (Hg38)
End
34654665/34189064 (Hg38)
Location type
Intron
Target gene
C1orf94
Nearest miRNA
hsa-mir-12136/Upstream/856473; hsa-mir-101-1/Downstream/480535;
Nearest TSS
ENST00000473358/Upstream/11295; ENST00000338513/Downstream/565983;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/11542, chr1-CpG: 22/Downstream/572363
Upstream sequence
CAGAGCATCACCAGGCCAATATGCATGAAGACTGAGGTTTTAAAGGAGAGGATCTCACGCAGGTTGTACAAGAAGAGCAAACACAACTGACCTGGAGAGC
Downstream sequence
tatgtgtacatgggtgtgtgcataggtgtgcatgtgtatgcatggatgtgtgttcatgtgtgcaggatgtgtgtgtatggatgtgtgtgcatggctgtgt
Target sequence
ACCTTCCTTCCCTGTTTTCTTTCCTTCCTGCTGGTTTTCCAAGCAGGAAGGCTACGGTGGTTtgtgtgtttgtgtgtgtatgtgcatgggtgtggtgtg
Reference
Li, C. L., et al.Androgen Receptor Enhances Hepatic Telomerase Reverse Transcriptase Gene Transcription After Hepatitis B Virus Integration or Point Mutation in Promoter Region. Hepatology,2019, 69(2): 498-512.
Curate