VISDB Viral Integration Site DataBase

VIS ID

TVIS10017097

Fusion event

HBV-ABCG8 integration

Validated

No

Detection method

Capture-NGS platform

Data source

Curated

Sample type

Disease

Hepatocellular carcinoma (HCC)

Quality evaluation

Good

Reported year

2019

PubMed ID

Virus name

HBV

Subtype

C

Reference genome

Start

2668

End

2758

Integrated sequence

AAATATTTACCATTGGATAAGGGTATTAAACCTTATTATCCAGAACATCTAGTTAATCATTACTTCCAAACTAGACACTATTTACACACTC

Chromosome

chr2

Cytoband

p21

Reference genome

Start

End

44105073/43877934 (Hg38)

Location type

Exon

Target gene

miRNAs that regulate target gene

hsa-mir-335-5p ; hsa-mir-124-3p ; hsa-mir-4776-3p ; hsa-mir-4659b-5p ; hsa-mir-4659a-5p ; hsa-mir-5590-5p ; hsa-mir-411-5p ; hsa-mir-6866-5p ; hsa-mir-19b-2-5p ; hsa-mir-19b-1-5p ; hsa-mir-19a-5p ; hsa-mir-4763-3p ; hsa-mir-1207-5p ; hsa-mir-1827 ; hsa-mir-6823-5p ; hsa-mir-940 ; hsa-mir-6893-5p ; hsa-mir-6808-5p ; hsa-mir-3664-5p ; hsa-mir-603 ; hsa-mir-8485 ; hsa-mir-618 ; hsa-mir-653-3p ; hsa-mir-4420 ; hsa-mir-181b-3p ; hsa-mir-181b-2-3p ; hsa-mir-26b-3p ; hsa-mir-5089-5p ; hsa-mir-7151-3p ; hsa-mir-5095 ; hsa-mir-5589-5p ; hsa-mir-4731-5p ; hsa-mir-6778-3p ; hsa-mir-4290 ; hsa-mir-6506-5p ; hsa-mir-619-5p ; hsa-mir-150-5p ; hsa-mir-1470 ; hsa-mir-186-3p ; hsa-mir-520h ; hsa-mir-520g-3p ; hsa-mir-6504-3p ; hsa-mir-512-3p ; hsa-mir-4438 ; hsa-mir-520e ; hsa-mir-520d-3p ; hsa-mir-520c-3p ; hsa-mir-520b ; hsa-mir-520a-3p ; hsa-mir-373-3p ; hsa-mir-372-3p ; hsa-mir-302e ; hsa-mir-302d-3p ; hsa-mir-302c-3p ; hsa-mir-302b-3p ; hsa-mir-302a-3p ; hsa-mir-93-5p ; hsa-mir-526b-3p ; hsa-mir-519d-3p ; hsa-mir-20b-5p ; hsa-mir-20a-5p ; hsa-mir-17-5p ; hsa-mir-106b-5p ; hsa-mir-106a-5p ; hsa-mir-4783-5p ; hsa-mir-1226-3p ; hsa-mir-1273h-5p ; hsa-mir-1292-3p ; hsa-mir-130a-3p ; hsa-mir-130b-3p ; hsa-mir-149-3p ; hsa-mir-1587 ; hsa-mir-1910-3p ; hsa-mir-1976 ; hsa-mir-2467-3p ; hsa-mir-301a-3p ; hsa-mir-301b-3p ; hsa-mir-30b-3p ; hsa-mir-3123 ; hsa-mir-3192-5p ; hsa-mir-3612 ; hsa-mir-3620-5p ; hsa-mir-3653-5p ; hsa-mir-3666 ; hsa-mir-3689a-3p ; hsa-mir-3689b-3p ; hsa-mir-3689c ; hsa-mir-377-5p ; hsa-mir-384 ; hsa-mir-3919 ; hsa-mir-4257 ; hsa-mir-4279 ; hsa-mir-4295 ; hsa-mir-4326 ; hsa-mir-4492 ; hsa-mir-4498 ; hsa-mir-4530 ; hsa-mir-4537 ; hsa-mir-454-3p ; hsa-mir-455-3p ; hsa-mir-4656 ; hsa-mir-4671-3p ; hsa-mir-4675 ; hsa-mir-4714-3p ; hsa-mir-4722-3p ; hsa-mir-4728-5p ; hsa-mir-4741 ; hsa-mir-490-3p ; hsa-mir-498 ; hsa-mir-5001-3p ; hsa-mir-5001-5p ; hsa-mir-5571-3p ; hsa-mir-6080 ; hsa-mir-6086 ; hsa-mir-634 ; hsa-mir-6499-3p ; hsa-mir-650 ; hsa-mir-6511a-5p ; hsa-mir-6516-5p ; hsa-mir-6727-3p ; hsa-mir-6747-3p ; hsa-mir-6779-5p ; hsa-mir-6780a-5p ; hsa-mir-6785-5p ; hsa-mir-6791-3p ; hsa-mir-6799-5p ; hsa-mir-6829-3p ; hsa-mir-6829-5p ; hsa-mir-6836-3p ; hsa-mir-6883-5p ; hsa-mir-7106-5p ; hsa-mir-762 ; hsa-mir-767-5p ; hsa-mir-7851-3p ; hsa-mir-7975 ; hsa-mir-922

Nearest miRNA

hsa-mir-1301/Upstream/8406361; hsa-mir-10b/Downstream/3499741;

Nearest TSS

Nearest CpG islands

None/Target, chr2-CpG: 135/Upstream/45754, chr2-CpG: 80/Downstream/117668

Upstream sequence

gggcttaaatccgtcattgtctttgatttacaACACAAAGTAAAATTTGATTTTCTTTTTTTTTCTAAAAGACAACATGAGAAATTCAATGTTACTGTAT

Downstream sequence

CTGGTGGGGGACCTGAGCAGACCCTTCAACTGCACTCCCTCCTCAGGAGCCCCTTCCTGGGGACAGTGAGGACAATGACCCTACAGATGCTCAGCTACAT

Target sequence

GGCTTCATGGTCCTGTACTACGTGTCCTTAAGGTTCATCAAACAGAAACCAAGTCAAGACTGGTGATTCACGCCAGACGTCTGCCCG