hsa-mir-130b-3p _LIHC.png
CCNA2 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10017114
Fusion event
HBV-CCNA2 integration
Validated
No
Detection method
Capture-NGS platform
Data source
Curated
Sample type
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Good
Reported year
2019
PubMed ID
Virus Sequence
Virus name
HBV
Subtype
B
Reference genome
Start
1125
End
1214
Integrated sequence
GTAAACAATACCTGAACCTTTACCCCGTTGCCCGGCAACGGCCAGGTCTGTGCCAAGTGTTTGCTGACGCAACCCCCACTGGCTGGGGCT
Host Sequence
Chromosome
chr4
Cytoband
q27
Reference genome
End
122745780/121824625 (Hg38)
Location type
Exon
Target gene
Nearest miRNA
hsa-mir-12113/Upstream/7167681; hsa-mir-1305/Downstream/3682634;
Nearest CpG islands
Upstream sequence
tgaaaggacctcttttgggGGTCCtttatccttaatccactgcaccctagcctctccccctagcaaactgctgaaatgccactgttatgagtcaccaatg
Downstream sequence
CTGTGGCAACCAACAAAAAACACAATGACGTTCTAGTGACCTAGATATAATTATGTTCCTTTCAGAAGTAAAGTTTTTTAAACATAGTAAAAACAATATG
Target sequence
CCTTGAACTACTGTTGATATATATAATAAATAGCAGTGCATTACAAAATATTCAAATACAGTCATTAATTTTTTTCTATTTTTCCCCAAG
Reference
Li, C. L., et al.Androgen Receptor Enhances Hepatic Telomerase Reverse Transcriptase Gene Transcription After Hepatitis B Virus Integration or Point Mutation in Promoter Region. Hepatology,2019, 69(2): 498-512.
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