AGBL4 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10017127
Fusion event
HBV-AGBL4 integration
Validated
No
Detection method
Capture-NGS platform
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Good
Reported year
2019
PubMed ID
30070724
Virus Sequence
Virus name
HBV
Subtype
C
Reference genome
NC_003977
Start
1648
End
1739
Integrated sequence
GTCTTACATAAGAGGACTCTTGGACTCTCAGCAATGTCAACGACCGACCTTGAGGCATACTTCAAAGACTGTTTGTTTAAAGACTGGGAGGA
Host Sequence
Chromosome
chr1
Cytoband
p33
Reference genome
GRCh37/hg19
Start
50330984/49865312 (Hg38)
End
50331075/49865403 (Hg38)
Location type
Intron
Target gene
AGBL4
Nearest miRNA
hsa-mir-12136/Upstream/5319760; hsa-mir-101-1/Downstream/1194434;
Nearest TSS
ENST00000473358/Upstream/13794; ENST00000494555/Downstream/158497;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/966071, chr1-CpG: 34/Downstream/158342
Upstream sequence
atctttaatattttgcagtttaaatatgatatgcctatgggtagttttcttggcatttaccctactgtatattctctgagcttcctggatcttttgttta
Downstream sequence
gcattttgctattctgcagcctccacggtgacatatccagatacaagagggacccaggcaaatagagtctggagcagaccctcagaaaaccacagcagcc
Target sequence
ggggttgccagacactttatacaggaatattccctctggcatcaggtcagtgcccctctgaaatggagctcccggaggaagaagcaggcag
Reference
Li, C. L., et al.Androgen Receptor Enhances Hepatic Telomerase Reverse Transcriptase Gene Transcription After Hepatitis B Virus Integration or Point Mutation in Promoter Region. Hepatology,2019, 69(2): 498-512.
Curate