Basic Information
VIS ID
TVIS10017163
Fusion event
HBV-chr10 integration
Validated
No
Detection method
Capture-NGS platform
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Good
Reported year
2019
PubMed ID
30070724
Virus Sequence
Virus name
HBV
Subtype
C
Reference genome
NC_003977
Start
944
End
1057
Integrated sequence
TGTTTTAGAAAACTTCCTATTAACAGGCCTATTGATTGGAAAGTATGTCAACGAATTGTGGGTCTTTTGGGTTTTGCTGCCCCTTTTACACAATGTGGTTATCCTGCGTTGATG
Host Sequence
Chromosome
chr10
Cytoband
q11.21
Reference genome
GRCh37/hg19
Start
42385524/41854578 (Hg38)
End
42385630/41854684 (Hg38)
Location type
Intergenic
Nearest miRNA
hsa-mir-1265/Upstream/6213326; hsa-mir-107/Downstream/1142879;
Nearest TSS
ENST00000439456/Upstream/3401397; ENST00000442306/Downstream/330655;
Nearest CpG islands
None/Target, chr10-CpG: 68/Upstream/2911472, chr10-CpG: 184/Downstream/256349
Upstream sequence
tttcatccacatacatacaagtttctcctgattgcattgccttgataaatcactcatacaaatgcctgttttaggctctgcaactaggaaacctgctcta
Downstream sequence
tggaatcctcattgaatggaaatgaaaggagtcatcatctaatggaatcgcatggaatcatcatcaaatggaatcgaatggaatcatcattaaatggaat
Target sequence
aatgtaatcatcatcaaatggaatcaaaaataaccatcatcaattggtattgaatggaattgtcatcaaatggaattcaaaggaatcatcatcaaatggaaccgaa
Reference
Li, C. L., et al.Androgen Receptor Enhances Hepatic Telomerase Reverse Transcriptase Gene Transcription After Hepatitis B Virus Integration or Point Mutation in Promoter Region. Hepatology,2019, 69(2): 498-512.
Curate