KLRG2 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10017174
Fusion event
HBV-KLRG2 integration
Validated
No
Detection method
Capture-NGS platform
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Good
Reported year
2019
PubMed ID
30070724
Virus Sequence
Virus name
HBV
Subtype
C
Reference genome
NC_003977
Start
2879
End
2945
Integrated sequence
CTGGGATTCTTTCCCGACCACCAGTTGGATCCAGCCTTCAGAGCAAACACCGCAAATCCAGATTGGG
Host Sequence
Chromosome
chr7
Cytoband
q34
Reference genome
GRCh37/hg19
Start
139163776/139479030 (Hg38)
End
139163872/139479126 (Hg38)
Location type
Intron
Target gene
KLRG2
Nearest miRNA
hsa-mir-10399/Upstream/434873; hsa-mir-11400/Downstream/2995401;
Nearest TSS
ENST00000635602/Upstream/62905; ENST00000521281/Downstream/4537;
Nearest CpG islands
None/Target, chr7-CpG: 39/Upstream/118298, chr7-CpG: 130/Downstream/3608
Upstream sequence
GCAGTTTCTGCTGGACATCAGGGTGAGTGGCCAGTTCATACATAATGAAGGAGAGAACACTGCTCGTGGTTTCATAGCCAGCAAAAATAAAGATAATTGA
Downstream sequence
ggctggagtgcagtggagtgatctcggctcactgcaacctctgcctcccaggttcaagcaattctcctgcctcagcctcctaaatagctgggattacagg
Target sequence
cctggccaacatcgtgagaccctgtcccttaaaaaaaaattatttttatttttatttatttatttattttgagacggagccttgctctgttgccca
Reference
Li, C. L., et al.Androgen Receptor Enhances Hepatic Telomerase Reverse Transcriptase Gene Transcription After Hepatitis B Virus Integration or Point Mutation in Promoter Region. Hepatology,2019, 69(2): 498-512.
Curate