hsa-mir-4700-5p _LIHC.png
DAB2IP _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10017180
Fusion event
HBV-DAB2IP integration
Validated
No
Detection method
Capture-NGS platform
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Good
Reported year
2019
PubMed ID
30070724
Virus Sequence
Virus name
HBV
Subtype
C
Reference genome
NC_003977
Start
3075
End
3150
Integrated sequence
CTTTGCCAGCAAATCCGCCTCCTGCCTCCACCAATCGCCAGTCAGGAAGGCAGCCTACCCCGCTGTCTCCACCTTT
Host Sequence
Chromosome
chr9
Cytoband
q33.2
Reference genome
GRCh37/hg19
Start
124439455/121677176 (Hg38)
End
124439548/121677269 (Hg38)
Location type
Intron
Target gene
DAB2IP
miRNAs that regulate target gene
hsa-mir-338-3p ; hsa-mir-18a-3p ; hsa-let-7b-5p ; hsa-mir-32-5p ; hsa-mir-92a-3p ; hsa-mir-92b-3p ; hsa-mir-1229-5p ; hsa-mir-1293 ; hsa-mir-197-5p ; hsa-mir-3132 ; hsa-mir-3144-5p ; hsa-mir-3191-3p ; hsa-mir-3194-3p ; hsa-mir-326 ; hsa-mir-330-5p ; hsa-mir-363-5p ; hsa-mir-3907 ; hsa-mir-4257 ; hsa-mir-4483 ; hsa-mir-4651 ; hsa-mir-4652-5p ; hsa-mir-4667-5p ; hsa-mir-4700-5p ; hsa-mir-5691 ; hsa-mir-608 ; hsa-mir-637 ; hsa-mir-6732-5p ; hsa-mir-6745 ; hsa-mir-6748-5p ; hsa-mir-6752-5p ; hsa-mir-6756-5p ; hsa-mir-6766-5p ; hsa-mir-6769a-5p ; hsa-mir-6769b-5p ; hsa-mir-6805-3p ; hsa-mir-6810-5p ; hsa-mir-6842-5p ; hsa-mir-6847-5p ; hsa-mir-7110-5p ; hsa-mir-7155-5p ; hsa-mir-8065 ; hsa-mir-8089
Nearest miRNA
hsa-let-7a-1/Upstream/1432126; hsa-mir-12126/Downstream/442813;
Nearest TSS
ENST00000422679/Upstream/25491; ENST00000487716/Downstream/22101;
Nearest CpG islands
None/Target, chr9-CpG: 64/Upstream/25262, chr9-CpG: 121/Downstream/21419
Nearest cancer related gene
DAB2IP(TSG, No orient, 0)
Upstream sequence
actccagagccaagacaacccccacagacccaggctccaagctggtcccctggtctaggatgtagagcagcacttgtggacctgggtttcatgcctgccc
Downstream sequence
gcactttgggaggccaaggtgggaggatcgcttgaggccaggagtttgagaccagcttgggcaacaaaggaaacccccatctctacaattttttttaaaa
Target sequence
AGCCTCTGGAAAATAACTGGAAGCCagaagtcacagattctcatgtttgaaaaaacgtgggggctgacatagtggctgagccctgtaatccca
Reference
Li, C. L., et al.Androgen Receptor Enhances Hepatic Telomerase Reverse Transcriptase Gene Transcription After Hepatitis B Virus Integration or Point Mutation in Promoter Region. Hepatology,2019, 69(2): 498-512.
Curate