Basic Information
VIS ID
TVIS10017215
Fusion event
HBV-chr7 integration
Validated
No
Detection method
Capture-NGS platform
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Good
Reported year
2019
PubMed ID
30070724
Virus Sequence
Virus name
HBV
Subtype
C
Reference genome
NC_003977
Start
827
End
944
Integrated sequence
ATACATTTAAACCCTAACAAAACAAAGAGATGGGGTTACTCTCTAAATTTTATGGGTTATGTCATTGGATGTTATGGGTCCTTGCCACAAGAACACATCATACAAAAAATCAAAGAAT
Host Sequence
Chromosome
chr7
Cytoband
q31.1
Reference genome
GRCh37/hg19
Start
108512812/108872755 (Hg38)
End
108512925/108872868 (Hg38)
Location type
Intergenic
Nearest miRNA
hsa-mir-10525/Upstream/6401224; hsa-mir-10399/Downstream/5780477;
Nearest TSS
ENST00000635602/Upstream/274380; ENST00000413406/Downstream/11719;
Nearest CpG islands
None/Target, chr7-CpG: 39/Upstream/302293, chr7-CpG: 68/Downstream/2689155
Upstream sequence
GTGTCTCTACAGAATATTGAGAAAGGGAAGAAGGAGCGATTTTTTAAACTCAAAATTAAAACAGAAATTTAAGCATATTTTTATATTAAAGAATACTTTG
Downstream sequence
atctctcatattaaaagcaaagcatctgctcataataggtgcttagtaaagcctattgaTTTAAATCAGAAAATCTTCAGAAAGGAGGCTTGGATCTTAT
Target sequence
ATTTTTCGAATAATTTGATACAGCATTCTTTTTAAtatttcctgaatcagattgtaaattcctcaagggtagacatcaggtcttctaagattttatacttttcgtacttcatt
Reference
Li, C. L., et al.Androgen Receptor Enhances Hepatic Telomerase Reverse Transcriptase Gene Transcription After Hepatitis B Virus Integration or Point Mutation in Promoter Region. Hepatology,2019, 69(2): 498-512.
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